| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3124 |
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| Symbol | |
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| ID | 4019650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3752955 |
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| End bp | 3755330 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637957175 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_564124 |
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| Protein GI | 91794473 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAATGC CTCTCTATTC TTCAGCTTAC TCAGCTAAGG CAAGTACTAA CAAAGTTAAC
TTCACTAGCC CTAAGTTAAT TGGCTCTAAG TTAATTATGC CGGGTTCGGT CAGGGTAAGG
TTAGCTAAAG CATTGCGTAC AGGTTCACTG CTTGGCTTAG CGTCATTGAT CTTCACGCCA
TTATTGTCTT TCTCAATTGC GGCTGAAGAG CAAGTTAGCA GCCAAGACAC TGCCAAAGTA
CAACTTAAAA GCCCGAATGA ACAAGATAAG AATCACAGTA CACTTGAAGT TATTCAGGTG
ATAGGTACAA GGCTGAATTT ACGTCAAAAA GCCTTAGAAG TCCCAAGGTC GATGACAGTA
GTGACTGACA AATATATTCA AGATACCCAA GCCACCGAGC TTACCGATGT ACTGGTGCAG
ACTCCGAGTA TTAGCGTTAG CGATAATGAC AGACCTTTGA TGGGGAATAT TAGTATTCGC
GGCTTTGGTA ATGAGCGCAT TAATCTAGAA GTCGACGGTG TGAGTTATAA ACAATTTAGT
GACGGCAGCA ATGCTAATGG CTATATCAGT CCATTAGATT TGGACCCTAG CATAGTACGG
GGTGTTGAAA TTACCCGTGG TGCAGATGGT ATTGGCAGTG GTAGTGGCGC CATTGGCGGC
CAAGTTAAAG TGGTCACTAA AGGCGCTTGG GATTATACCT CTGGGGCGGC GGGTTCAGGC
GTATTAGTGC GAACTGGGAT GGATGATGCA ACTCATATGC GCCGCGGCGG GGTTACGGGT
TATGTTGCAA CCGATGAGCT GGCTTTAGTG CTGCATGCTA ATCGACGCAC CTTCGGGGAC
ATTAAGCTTA ACCCTAGGGA CAGTGAAGGT TCGCTTCGAG GCCAAACTCA GACCCTTAAA
AATGATGGTC AAAGCGATGA TTTGCGCCTT AAAGTAAATT GGGATAGTGC TCACGGTCAG
TTAGATTCAG ATACCTTTTA CACCGCCAGT GAAGTGGCTG AGTTGCCTTT TGGTAATAAT
ACTCGATGGA TAGATCAAGC CTTAACTGAA AGTGAAACCG GTGAACGTTT AAGCCAGTCT
TTAGCTTATC ATTATGCCAG TGACTCACAG TGGTTGGATT TACGTGCTAA GGCGTATTAT
CAAGATTATC AAAGAGTACG TGAACAAGAT GGCAAAATAG TCTTAGGCAA GAATGAGTAT
CCGTTTAATA AGCAGGACAG CTTTGAAGAT CAAAGTTTTG GTTTATCGTT AAGTAATAGC
ATTAACCATC AAATGAATGA CTGGAAGGGA GAGTTACAGT TATTTGCGAG TGTCGATCGC
AGTCAGTTTG AAGATACAGT AACGGATCGA CTCACCAACA CCCAAGCGAC TTATTATGGG
CACAGTCAGG GAGATATGTT CGCCTTAGGT GTTAGGCATG AATCGGATTA CTCGAGCTGG
TTGAGTACCG AGGCTGGCAT TAGGCTCGAC TCGTTTAGCA ATCAATCGGA TAATTTTACT
GAATACGGTG AAAATAGCGA TGAGCAGTGG TCTTCCAATC TAGGCGTTAC TATTAGACCA
ACTGAATGGT TGAGATTTTA TGGTCGATAT AATGAGAGCT TTCGCGGCGC CAATTTAAGA
GAGCTATATA AGAAAGATGA ATGGGTGTGT CATCGTCCTA GCAAGCATTG CTACAGCGAG
CCACAACCAG GACTAAAGCC AGAGAGCAGC AGCAACTACG AGTTTGGTTT TGGTTTAGTA
TTCAAGGATA TCGCCTTTAG TGATCAATTG TTATTCAAAT TGAATTGGTT CGATACTCAA
GTTGATAATT ACATAGATAC AGCACCTTAC ATGTACAAGC TGGTGGATGG TCAAAAAGTG
GCTGCATCGC CAAAAGAGGC CACTCACAGA GACTACTCCA GTAAAAATAT CGGTAAATTG
TATTCCAAAG GGATAGAGGC TGAGCTGACG TATCAATATC AAGACTTAGA TATATTTGCT
AATTACAGTC GAGTGAGAAT GGATGTAGAA GGCATGCCTA ATTTCTATTT AGGCACGATA
GAGCAAGTTC GCCAGCCGTA CACGCGAGCG CCTCAAGATA GGATTAACCT TGGCCTAAGT
TGGCAATTAG TCAGTGAACT GAGGCTGTCT TGGGTATCAA GTTTTGCCAT GGATATGAAG
CGTCTGCCTG AATTGTACCT AGAGAACGAG ATGGACGCAG AAGGATACCA AGTGCATAGC
CTTTATATCA CTTATCAAGC TTCATGGTTA AGTGGTTTTG AGCTACGTGC TGGAGTCGAA
AACCTGCTGG ATGAGGCCTA TTCGGTTTGG CCAGATGATG AAGACACTAG CCTTCCTGGT
CGCAATGCAA AGCTTGCCTT GAGCTATCAC TTTTAA
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| Protein sequence | MRMPLYSSAY SAKASTNKVN FTSPKLIGSK LIMPGSVRVR LAKALRTGSL LGLASLIFTP
LLSFSIAAEE QVSSQDTAKV QLKSPNEQDK NHSTLEVIQV IGTRLNLRQK ALEVPRSMTV
VTDKYIQDTQ ATELTDVLVQ TPSISVSDND RPLMGNISIR GFGNERINLE VDGVSYKQFS
DGSNANGYIS PLDLDPSIVR GVEITRGADG IGSGSGAIGG QVKVVTKGAW DYTSGAAGSG
VLVRTGMDDA THMRRGGVTG YVATDELALV LHANRRTFGD IKLNPRDSEG SLRGQTQTLK
NDGQSDDLRL KVNWDSAHGQ LDSDTFYTAS EVAELPFGNN TRWIDQALTE SETGERLSQS
LAYHYASDSQ WLDLRAKAYY QDYQRVREQD GKIVLGKNEY PFNKQDSFED QSFGLSLSNS
INHQMNDWKG ELQLFASVDR SQFEDTVTDR LTNTQATYYG HSQGDMFALG VRHESDYSSW
LSTEAGIRLD SFSNQSDNFT EYGENSDEQW SSNLGVTIRP TEWLRFYGRY NESFRGANLR
ELYKKDEWVC HRPSKHCYSE PQPGLKPESS SNYEFGFGLV FKDIAFSDQL LFKLNWFDTQ
VDNYIDTAPY MYKLVDGQKV AASPKEATHR DYSSKNIGKL YSKGIEAELT YQYQDLDIFA
NYSRVRMDVE GMPNFYLGTI EQVRQPYTRA PQDRINLGLS WQLVSELRLS WVSSFAMDMK
RLPELYLENE MDAEGYQVHS LYITYQASWL SGFELRAGVE NLLDEAYSVW PDDEDTSLPG
RNAKLALSYH F
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