| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3122 |
|---|
| Symbol | |
|---|
| ID | 4019648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3749645 |
|---|
| End bp | 3751165 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637957173 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_564122 |
|---|
| Protein GI | 91794471 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0397] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCCC CTTCTCGTTC ACATCTTGCT AGTCCTATAC TCGTGGCCAA CTACCGTTCC
TTGCCCAGTT TTATGTATCG TGACAGTTTG CCAGAGGCGG CTGTTTCGCC GCAGTTATTG
GCGCTAAATA CTAGGTTGCT TGAGACTCTA GAACAAGATC TTGCTTGGTT TAACAGCTCC
GATGCCCTAG AGCAGTTATC AGGGAAAACC TATTACGGCA GCAATTTGCC GTTTGCGTTA
GCGTATTCTG GGCATCAGTT TGGTGGCTGG TCTCCCGTGC TGGGTGATGG CCGGGCTCAT
GTATTGGGTC AGCTTAAAAC TGCTGCAGAC GAACTCATTG ATGTACAACT CAAAGGCTCT
GGCGCTACGC CTTTTTCTCG CGGAGGCGAT GGCCGGGCGA CCCTAGGCGC GGTTATCCGT
GAATATTTAC TCAGTGAAGC CATGGCAGGG CTTAATATTT CAACGACGGG CTCACTGGCT
GTTATCGCAA CGGGTGAAGA TGTATGGCGT AATGGCGCCT ATCCTGGGGC TATTCTAGTG
CGCACCGCTA AGAGTCACCT GAGAGTGGGC AGTTTTCAAT ATGCAGCCGT GCACCAAGGG
CCTGAGGCGG TAAAAACCTT AGCCGATTTT GCGTTAGCTC AGTATTACCC GGAACTCAGT
CATGATGAAA ATCCATACCA AGCCTTACTA GCGCAAGTCA TTAAGGGTCA AGCTGAGCTG
GTAGCCCAGT GGATGTTGGT GGGCTTTATA CATGGGGTGA TGAATACCGA TAACAGCTCT
ATCACAGGGG AAACCATAGA TTATGGGCCT TGTGCCTTTA TGGATGAGTT TAACCCTAAT
AAAGTGTTTA GCTCTATTGA TAGCCAAGGT CGTTATGCTT GGGGCAATCA AGGGGCGATA
GCCCAGTGGA ACATGGCCCG CTTAGGGGAA ACCTTGCTAC CGTTACTGGA TAGTGATGAA
GCTAAAGCCC TCGAAATCGC CCAAGCTCAG CTGGGTGATT TTAACCGTCT GTTTGCCGAA
CATTTCTATC AAGGAATGGC GAGAAAACTT AGCCTGGACG CATCAGATCC CGAGCTTATC
CCTTTTGTTG ATAGCACGTT ACAACTGATG ACAAATACTC GCGTCGATTT TTGCCAATTC
TTCAATGCCT TAACTGAATA TCACAGTACT CATAGGGAAC AAGATGCGGG TCTAGTCGCT
TTGTTTTCCA CTGAAGCATT CCCATCTTTG TCATCGACAC CAGCGCAATT ATTGCAAGAC
TGGTTATCGC AGTGGCAAGC CAAGGCATGT GACAGTCAAG CCGCATTGGC TGCCATGATA
AAAGCAAATC CTAAATTCAT TGCCCGCAAT CATAAGGTGG AAGCCGCCAT ATCGGCAGCG
GAGCAAAATA ATGATTATTC ACTATTTTTA GATATGGCTA GGGTATTGGC TAATCCTTAT
GTGCTTGCAG AGCAAGATAA GCATTACCAG GATGCGCCAA CTCCAGACCA AAGGGTAAAG
CAAACTTTTT GTGGTACTTA G
|
|---|
| Protein sequence | MDAPSRSHLA SPILVANYRS LPSFMYRDSL PEAAVSPQLL ALNTRLLETL EQDLAWFNSS
DALEQLSGKT YYGSNLPFAL AYSGHQFGGW SPVLGDGRAH VLGQLKTAAD ELIDVQLKGS
GATPFSRGGD GRATLGAVIR EYLLSEAMAG LNISTTGSLA VIATGEDVWR NGAYPGAILV
RTAKSHLRVG SFQYAAVHQG PEAVKTLADF ALAQYYPELS HDENPYQALL AQVIKGQAEL
VAQWMLVGFI HGVMNTDNSS ITGETIDYGP CAFMDEFNPN KVFSSIDSQG RYAWGNQGAI
AQWNMARLGE TLLPLLDSDE AKALEIAQAQ LGDFNRLFAE HFYQGMARKL SLDASDPELI
PFVDSTLQLM TNTRVDFCQF FNALTEYHST HREQDAGLVA LFSTEAFPSL SSTPAQLLQD
WLSQWQAKAC DSQAALAAMI KANPKFIARN HKVEAAISAA EQNNDYSLFL DMARVLANPY
VLAEQDKHYQ DAPTPDQRVK QTFCGT
|
|---|
| |