| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3119 |
|---|
| Symbol | |
|---|
| ID | 4019645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3746552 |
|---|
| End bp | 3747640 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637957170 |
|---|
| Product | 3-oxoacyl-(acyl-carrier protein) synthase |
|---|
| Protein accession | YP_564119 |
|---|
| Protein GI | 91794468 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III |
|---|
| TIGRFAM ID | [TIGR00747] 3-oxoacyl-(acyl-carrier-protein) synthase III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCTG TGATTAAATC GGTAAAAATA GTAGGTATGC AAGCGGCAGT TCCTACTCAC
AGACATTCCT ATGTCGAAAA TCCAGATATT TTCACTCCAG AAGAAGCCAA TAAAATATAC
GCAAGTACAG GCATCCATAG CCGACGCATT TTACCAAAGC ACTTGTGTGC TTCGGATATG
TGTGTTGCTG CTGCTGAAGC ATTATTAAGC CGATTGAGCT GGGATCCGGC TTCTGTCGAT
GTGTTAATTT TTGTCTCTCA AGACTCAGAT TATGCATTGC CTGCAAGTGC CTGCCTAATG
CAACATCGAT TGGGGCTATC TCAAGGTGCT GCGTGTATGG ACTTGAGTTT GGGTTGCTCA
GGATTTGTGT ATGCGACATG GATAGCGAGC CAATTACTTG CGGGCTCCAA CGGAAAAAGA
GCCTTAGTAT TGTGTGGTGA TACCTCTAGT CGCCATTTGT TACCTGATGA TAGAGGAACC
TTGCCTCTTT TTGGTGATGC GGGTGTGGCT ACAGCTCTTG AGTTTGATGA ATCATGGCCT
GATTCTTATG CCGTTTTTGG TACGGATGGT ACAGGTGGTC AGCATATTGC GGTCAAAGCT
GGTGGCAGAA GGCACCCAAC GATACCAGAA TTAACGGCTC GGACAGCAGA AGATGAAGCA
AGGTTGTATC GTGACTCTAG ATTGTATCTT AATGGCGCAG CTGTATTCTC ATTTACCCTT
AAAGTTGTAC CTAAATTAGT GAGTGATGTG CTAGCACTAG CTAATGTGAG CGTGGATGAT
ATTGATATGG TTGTTATGCA CCAAGCAAAT CAATTTATTC TTGAACATTT AAGAAAAAAA
GCAAAAATAG ATAAAGATAA GTATCTCATA GATATGGCTG ATTTCGGCAA TACATCCAGT
GCATCAGTGC CGTTAGCTAT TTGCCATAAG TTGACAGATT TTTTTACTCA TAAGACTCAA
AAAGTTATGT TAGGCGGATT TGGAGTTGGT TGGTCTTGGG GGGCAATTAT TACAGATATA
GGCCCAATGG TTTCTCCTGA ACTAATCGAA ATTTCAGATG ATTTTGAACC TCTCTCATTA
GCGGTATGA
|
|---|
| Protein sequence | MEAVIKSVKI VGMQAAVPTH RHSYVENPDI FTPEEANKIY ASTGIHSRRI LPKHLCASDM
CVAAAEALLS RLSWDPASVD VLIFVSQDSD YALPASACLM QHRLGLSQGA ACMDLSLGCS
GFVYATWIAS QLLAGSNGKR ALVLCGDTSS RHLLPDDRGT LPLFGDAGVA TALEFDESWP
DSYAVFGTDG TGGQHIAVKA GGRRHPTIPE LTARTAEDEA RLYRDSRLYL NGAAVFSFTL
KVVPKLVSDV LALANVSVDD IDMVVMHQAN QFILEHLRKK AKIDKDKYLI DMADFGNTSS
ASVPLAICHK LTDFFTHKTQ KVMLGGFGVG WSWGAIITDI GPMVSPELIE ISDDFEPLSL
AV
|
|---|
| |