| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3115 |
|---|
| Symbol | |
|---|
| ID | 4019641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3743748 |
|---|
| End bp | 3744449 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637957166 |
|---|
| Product | spore coat polysaccharide biosynthesis protein glycosyltransferase-like protein |
|---|
| Protein accession | YP_564115 |
|---|
| Protein GI | 91794464 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3980] Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACCCTT CTCCTAATTA TGGCGCCGCA GAATACGCAC TAAGAGCACC TAATGCTTTT
TACTGTTTAG GCCCTTCGTA CACATTCCTC AGAAAAGAGT TCTCAATTTG CTGCTTAACT
CCTCTAGCGG CCAGAGATAG TGTTTTGGTG ACACTCGGTG GAACTGACAG CCAATTACTG
GCATATCCTA TTAGCAAAGC AATTAATGAA CTGCAGCTAG CGTGTAAGGT TATTTTATTG
CTTGGTAATA GTCATAAAGA GCAGGCTAAA TTAAATAAAT TAGTTGAACA ATATCCTTTG
TTCTCTATTG TCTATCGTCC TATATCGGTT GCCGATATCA TGATTAATTG CGGTTTAGCC
ATTGCCGTGG CTGGGGGGAC CTTGGGTGAA CTTGCTAGTT TAGGTGTTCC AACTTTAGCT
CTCATTACTG TGGATAATCA GTTGTCGGCG TTAACTTCCC CATTAAATAA CACTTGGTAC
ACGGCAACTG ATGTTAGGCA CTTTAATGCG CAAGTGAGTC GCTTAGATGC TAATGAAGCA
TTGTTGAGCG AGATCAAAAC AGAGGTTGAG ATGCTGTGGC ATGATAAATG CCTGAGAAAC
AAAATGAGTA ACTTTGCTCG TCGTTTAGTT GACAGTCAGG GTTGTATGCG TGTTGTTGAG
CAGATAAAAA TAGGCTTAAA ACAGAAATTG GAATTGGTAT GA
|
|---|
| Protein sequence | MNPSPNYGAA EYALRAPNAF YCLGPSYTFL RKEFSICCLT PLAARDSVLV TLGGTDSQLL
AYPISKAINE LQLACKVILL LGNSHKEQAK LNKLVEQYPL FSIVYRPISV ADIMINCGLA
IAVAGGTLGE LASLGVPTLA LITVDNQLSA LTSPLNNTWY TATDVRHFNA QVSRLDANEA
LLSEIKTEVE MLWHDKCLRN KMSNFARRLV DSQGCMRVVE QIKIGLKQKL ELV
|
|---|
| |