| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3080 |
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| Symbol | |
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| ID | 4019606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3698545 |
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| End bp | 3701781 |
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| Gene Length | 3237 bp |
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| Protein Length | 1078 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637957132 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_564081 |
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| Protein GI | 91794430 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCTCAC AATTTTTCAT TAAACGGCCT ATCTTCGCCG CTGTGATCTC CTTGATGTTT
TTCATCGCGG GCGCTATCGC GGTGTGGAAG TTACCTATCA CCGAATACCC AGAAGTAGTG
CCGCCAACTG TGGTGGTTAC CGCCAGTTAC CCAGGCGCTA ACCCTAAGGT GATTGCGCAA
ACTGTGGCAT CCCCCCTTGA GCAGGAAATT AACGGCGTAG AAGACATGTT GTATATGTCA
TCCCAAGCCA CCTCCGATGG CCTGATGACG CTGACCATTA CCTTTGCCAT TGGCACAGAT
GTGGACCGCG CTCAGACTCA GGTGCAAGCC CGTGTCGATA GAGCCAGCCC TCGCCTGCCT
CAAGAAGTGC AGCGCCTAGG CATAGTGACA GAAAAATCAT CCCCTGATTT AACCATGGTG
GTGCATTTAA CCTCGCCGGA TAAACGCTAT GACATGCTGT ACTTGTCAAA TTATGCGGCG
CTGAATGTTA AAGATGAGCT CGCCCGTATT GAAGGTGTGG GCGCTGTGCG CTTATTTGGC
GCCGGCGAAT ACAGCCTGCG TATTTGGCTA GAACCCAACA AAATGGCGGG CTTAAACTTG
TCACCCGCAC AAGTCCTTGC GGCAGTGCGT GAGCAAAACC AGCAAGCCGC AGCAGGTAGC
CTTGGCGCTC AGCCCAGTGG CGGCGCGGAT TTTCAATTGC TGATTAACGT GAAAGGCCGC
TTAAGCACGG TTGAAGAATT TGAAGACATC ATTATCAATG TAGGCCCACA AGGCGAACTT
AGCCGCCTAA GGGATGTGGC CAGAGTCGAG TTAGGCGCCA GCACTTATGC CCTGCGCTCG
CTACTGGATA ATCAAGACGC TATCGCCATT CCTGTGTTCC AAGCCTCAGG CTCAAATGCG
ATTCAGATTT CTGATGATGT GCGCGCAAAA ATGAGCGAGC TGTCAGCCTC TTTCCCCGAC
GGCTTAAGCT ATGACATAGT GTATGACCCC ACAGTGTTTG TGCGCGGCTC TATTGAAGCT
GTGGTTAAAA CCTTGTTTGA AGCCATATTG TTGGTGGTAT TAGTGGTGGT GCTCTTCTTG
CAGACATGGC GCGCCTCAAT AATCCCCTTA GTGGCCGTGC CTGTGTCCTT GGTGGGTACC
TTTGCCTTCA TGCATTTATT GGGCTTCTCG TTAAATGCGC TGTCACTCTT TGGTCTAGTG
CTGGCGATTG GTATCGTGGT CGATGACGCC ATAGTCGTGG TTGAAAACGT TGAGCGTAAT
ATTGGCGATG GTCTCTCCCC AATCGCGGCT ACTCAAAAAG CCATGAGAGA AGTGACTGGT
CCTATTATTG CCACCACCTT AGTACTGGCG GCAGTATTTA TCCCCACCGC CTTTATGGCA
GGATTAACCG GGCAATTCTA TAAACAGTTT GCGCTAACCA TCACCATTTC GACCTTTATA
TCGGCGTTAA ACTCGCTGAC ATTAAGCCCA GCCCTCGCCG CATTATTGCT TAAAGGCCAT
GATGCGCCAA AAGATCGCTT AACCCGCGCC ATGGATAAAC TATTCGGCAC TTGGTTATTC
AATCCTTTTA ACCGCATGTT TGAAAAGGCG TCACGAGGCT ACGGTTTTAT CGTTAAAAAA
GTCATCCGCT TTGGCGCCAT AGTCGGCATC ATCTACCTAG CGCTAGTTGC CTTAACTGGG
GTGATGTTTG CTAGCACACC AACAGGGTAT GTGCCGGGGC AAGACAAGCA ATACCTAGTG
GCGTTTGCAC AGCTCCCCGA TGCAGCATCA CTGGATCGCA CCGAAGCGGT AATCAAGCAG
ATGTCAGAAA TTGCCCTAGC ACAACCCGGT GTTGCTCACT CGGTCGCCTT CCCAGGCCTT
AGCATCAATG GTTTCACCAA TAGCCCGAAC AGCGGCATCG TCTTTACCCC ACTGGATGAC
TTTAGTGAGC GCACCGATCC AAGTTTGTCG GCAGAGGCTA TCGCCATGCA GCTAAACCAA
AAGTTTGCTG GAATAGAAGA TGCCTATATC GCTATCTTCC CGCCGCCGCC AGTGCAAGGC
TTAGGCACTA TTGGTGGCTT TAGATTGCAA ATTCAAGACA AGGGCAACTT AGGTTACGAC
GAGCTATACA AAGTCACTAT GCAGGTAATG CAAAAAGCTT GGGGCACCCC AGAGCTTACT
GGGGTATTTT CAAGCTATCA GGTGAATGTG CCGCAGCTTG ATCTCAATAT CGATCGCACC
AAGGCTAAGC AGCAAGGCGT GTCACTGGAT GAAGTATTCC AAACCCTGCA AACCTACATG
GGCTCGACTT ACGTTAACGA CTTCAACCAG TTTGGTCGTA CTTATCAAGT AAAAATGCAG
GCCGATGAGC AGTTCCGTCA AACGCCAGAG CAAATTAGCC AGATAAAAGT GCGTAACCAG
CAAGGCGACA TGGTGCCGCT GGGCTCGTTT ATTAATGTCA CCCAAGTGGC AGGCCCTGAC
AGAGTCATGC ATTACAACGC TTACACTACG GCAGAGTTAA ACGGCGGCCC AGCACCCGGT
TATAGTTCGG GTGAAGCCCA AGCTGCGATT GAGAAAATTT TGGCTGAAAC CCTGCCAAAC
GGCATGACCT ATGAGTGGAC TGAAATCACC TACCAGCAAA TTCTGGCAGG CAACGCCGGC
TTGTTAGTCT TCCCGCTAGT GATCTTGTTA GTGTTTATGG TGTTAGCCGC CCAGTATGAA
AGCCTAAGCT TACCTATGGC CATCATATTG ATTATCCCTA TGACCTTATT GTCAGCCTTA
AGCGGCGTGC TGCTTTACGG CGGAGATAAC AACATCTTCA CTCAGATTGG CTTAATTGTC
TTGGTGGGGC TGGCGACCAA AAATGCCATC TTAATCGTTG AATTTGCGAA AGAACTGCAA
GATGAAGGCA TGAATGTCAT GGACGCGATT TTAGAGGCCA CCCGTCTGCG TTTACGCCCG
ATATTAATGA CCTCCATCGC CTTTATCATG GGTGTAGTGC CTATGGTGTT CTCAACGGGT
GCTGGCGCTG AAATGCGTCA AGCCATGGGG GTTGCGGTAT TTGCAGGCAT GATAGGCGTG
ACCATCTTTG GCCTACTATT AACGCCGCTC TTCTATCACT TTATGGCTAA ACGTCAAAAG
ACTAATGTCG ACAAAAATGT TGAACCCGAT GACAGCCAAG GTCAGTTATT TGCGCCTGTC
GTTAACCCTG CTGTTAACAC GTTAGTGACT CACAAAGGAG CCAATGCAGA TGCTTAA
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| Protein sequence | MFSQFFIKRP IFAAVISLMF FIAGAIAVWK LPITEYPEVV PPTVVVTASY PGANPKVIAQ
TVASPLEQEI NGVEDMLYMS SQATSDGLMT LTITFAIGTD VDRAQTQVQA RVDRASPRLP
QEVQRLGIVT EKSSPDLTMV VHLTSPDKRY DMLYLSNYAA LNVKDELARI EGVGAVRLFG
AGEYSLRIWL EPNKMAGLNL SPAQVLAAVR EQNQQAAAGS LGAQPSGGAD FQLLINVKGR
LSTVEEFEDI IINVGPQGEL SRLRDVARVE LGASTYALRS LLDNQDAIAI PVFQASGSNA
IQISDDVRAK MSELSASFPD GLSYDIVYDP TVFVRGSIEA VVKTLFEAIL LVVLVVVLFL
QTWRASIIPL VAVPVSLVGT FAFMHLLGFS LNALSLFGLV LAIGIVVDDA IVVVENVERN
IGDGLSPIAA TQKAMREVTG PIIATTLVLA AVFIPTAFMA GLTGQFYKQF ALTITISTFI
SALNSLTLSP ALAALLLKGH DAPKDRLTRA MDKLFGTWLF NPFNRMFEKA SRGYGFIVKK
VIRFGAIVGI IYLALVALTG VMFASTPTGY VPGQDKQYLV AFAQLPDAAS LDRTEAVIKQ
MSEIALAQPG VAHSVAFPGL SINGFTNSPN SGIVFTPLDD FSERTDPSLS AEAIAMQLNQ
KFAGIEDAYI AIFPPPPVQG LGTIGGFRLQ IQDKGNLGYD ELYKVTMQVM QKAWGTPELT
GVFSSYQVNV PQLDLNIDRT KAKQQGVSLD EVFQTLQTYM GSTYVNDFNQ FGRTYQVKMQ
ADEQFRQTPE QISQIKVRNQ QGDMVPLGSF INVTQVAGPD RVMHYNAYTT AELNGGPAPG
YSSGEAQAAI EKILAETLPN GMTYEWTEIT YQQILAGNAG LLVFPLVILL VFMVLAAQYE
SLSLPMAIIL IIPMTLLSAL SGVLLYGGDN NIFTQIGLIV LVGLATKNAI LIVEFAKELQ
DEGMNVMDAI LEATRLRLRP ILMTSIAFIM GVVPMVFSTG AGAEMRQAMG VAVFAGMIGV
TIFGLLLTPL FYHFMAKRQK TNVDKNVEPD DSQGQLFAPV VNPAVNTLVT HKGANADA
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