| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3079 |
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| Symbol | |
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| ID | 4019605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3697276 |
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| End bp | 3698532 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637957131 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_564080 |
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| Protein GI | 91794429 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.787711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGACGA CAAATACGCG TAAAAAATTT ATCTTAGGTA ACCTGACCGC TCTGGTGCTA
TCGGCGTTGG CTTTGTCGGC CTGTGGCAGT CCAGAAGCAT CGCCGACGCA GCAACAAATG
ATGGCGCCGC CAGTCTCCGT GGCTAATGTG TTAGTTGAGC GCATCACAGA GTGGGATGAA
TTCACCGGCC GCCTGCAAGC CCCAGAAACT GTGACTCTGA TGCCTAGGGT GTCGGGTTAT
ATTGAATCGG TAAACTTTGT CGAAGGCGCG TTAGTCAAGC AAGGTGAGCC ATTATTTCAA
ATCGACAATC GCGCTTTTAA AGCCGAAGTC GACCGTTTAA AAGCCAATCT TGACAGTGCT
AAAACCGCCA ACAACTTAGC CATCAATGAC TATCAGCGAG CCAAGACGCT GAGCGAGCAA
AAAGCCATTT CAGCCGAAAT GCTAGACAGC CGTTTCGCCC GCAAGCAGCA AACCCTTGCC
GAAGTGGCCG CCATTGAAGC GGCATTAATG AAAGCCGAAC TCGATTTGTC ATTCACCACA
GTCACGGCCC CCATTACAGG CCGAGTGTCT AACGCGCTTA TCACCCGTGG TAACTATGTC
AATGCCGGTC AAAGCCCGCT CACTCATATC GTTTCAACCG CGCAAATGTA TGCCTATTTC
GATATCGACG AGCAAACCTA CCTCAAATAC GCCCAGCTTA GCGAGCAAGG TAAGCGCGCC
GATAACCGCA GCAGCGAGCA AAGCGTGTAC CTGGCGCTCG CCAACGAGAC TGAGTTCAAT
CGTTTAGGCA AGGTAGATTT TGTCGATAAC GCCCTAAACC AGCAGACAGG CACACTGCGC
CTTCGCGCAA GTTTTGATAA TACGGATGGC GATTTACTGC CTGGGCTTTT TGCCAAAATT
CGCCTCGCGG GTAGCGCAAG CTATGACGGG GTATTAATCG ATGACAAAGC CATAGGCACA
GATTTAAGCA GTAAATATGT GCTGCTAGTC ACCGACACCA ACCAGTTGGA ATACCGCCCT
GTGACCTTAG GTGAAAAAGT TCACGGCCTT CGCATCGTCA CCCAAGGATT AACGGCCAAA
GACAGAATTG TTATCAATGG CATGCAAAAA GTCAGACCTG GTATGCAGGT GGAGCCGAAC
ATGCTTCCCA TGGCACCAGA GGCCGAACTT GAGCAGCTGC GCCAGAAACA AGCCCGTTTA
GACAAAGCAC AACAAGCATT AACAGCGCAA ACTGCCACCA GCAGCACCCG CGGCTAA
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| Protein sequence | MATTNTRKKF ILGNLTALVL SALALSACGS PEASPTQQQM MAPPVSVANV LVERITEWDE
FTGRLQAPET VTLMPRVSGY IESVNFVEGA LVKQGEPLFQ IDNRAFKAEV DRLKANLDSA
KTANNLAIND YQRAKTLSEQ KAISAEMLDS RFARKQQTLA EVAAIEAALM KAELDLSFTT
VTAPITGRVS NALITRGNYV NAGQSPLTHI VSTAQMYAYF DIDEQTYLKY AQLSEQGKRA
DNRSSEQSVY LALANETEFN RLGKVDFVDN ALNQQTGTLR LRASFDNTDG DLLPGLFAKI
RLAGSASYDG VLIDDKAIGT DLSSKYVLLV TDTNQLEYRP VTLGEKVHGL RIVTQGLTAK
DRIVINGMQK VRPGMQVEPN MLPMAPEAEL EQLRQKQARL DKAQQALTAQ TATSSTRG
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