| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3075 |
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| Symbol | |
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| ID | 4019601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3693619 |
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| End bp | 3694794 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637957127 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_564076 |
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| Protein GI | 91794425 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000605202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAT TTCAATCGAT TGATGTTGCA GATTATTATG AGACGGACAC TTTTAACCAG
ATCAAGGAGT TTGCCAAAGA CAAACCGACT CCTTTCGTGG TCATAGATAC CAAGATCATT
GCGAAACAAT ACGATGACAT GGTGAAGAAT TTCCCTTATG CGAATGTGTA TTATGCAGTC
AAGGCAAATC CGGCCAAAGA AGTGTTAACC CTGTTGCGGG ATAAAGGCTC CAATTTCGAT
ATCGCCTCAA TTTATGAATT AGAAATGGTG ACCTCTATCG GTGTGTCTGC CGATCGTATC
AGTTACGGTA ACACCATTAA GAAGCGTGTG GATGTGCGTT CTTTCTATGA GCAAGGGGTA
CGCATGTTTG CCTCTGACTC AGAAGCCGAT TTACGCATGA TCGCCGAAGA AGCCCCAGGC
TCAAAAATCT ACGTGCGCAT TCTTACTGAA GGCACCCACA CGGCTGACTG GCCGTTATCG
CGCAAATTTG GCTGTCAAAA TGAAATGGCC TATGACTTAT TGGTCTTAGC TCGTGAGCTT
GGCCTAGTGC CACACGGTAT TTCATTCCAT GTGGGTTCTC AGCAGCGTGA TATCGGTGCT
TGGGACAGTG CAATTGGCAA AGTTAAAGGC ATCTACGATC GCCTTAAAGA AGAGCACGGT
ATCCAGCTTA AGATGATTAA CTTAGGTGGC GGTTTCCCAG CCAACTATAT CGACAAGACC
AACGAACTGG CGACCTATGC CGAGCAGATC ACCCATTTCC TAAAAGAAGA TTTCGGTGAT
GATTTACCTG AGGTTATTTT AGAGCCAGGG CGTTCATTAT TGTCTAATGC GGGTGTGCTA
GTGTCTGAAG TGGTATTGAT TTCTCGCAAG TCAAACACCG CCCTTGAGCG CTGGGTCTTT
ACCGATGTGG GTAAGTTTTC AGGCTTAATT GAAACCACAG ATGAAGCGAT TAAGTTCCCT
ATATATACCG ATAGAACCGG TGAGTTAGAT AAGTGCGTTA TCGCAGGACC AACCTGTGAC
AGTGCCGATA TCATGTATGA GCACTACAGC TACGGCTTAC CTAAAGATCT TGCCATTGGC
GATCGCATGT TCTGGTTAAC GGCGGGTGCC TATACCACCA CGTATTCGGC GGTATGCTTT
AATGGTTTCC CACCACTTAA AGATTACTAT TTGTAA
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| Protein sequence | MSQFQSIDVA DYYETDTFNQ IKEFAKDKPT PFVVIDTKII AKQYDDMVKN FPYANVYYAV
KANPAKEVLT LLRDKGSNFD IASIYELEMV TSIGVSADRI SYGNTIKKRV DVRSFYEQGV
RMFASDSEAD LRMIAEEAPG SKIYVRILTE GTHTADWPLS RKFGCQNEMA YDLLVLAREL
GLVPHGISFH VGSQQRDIGA WDSAIGKVKG IYDRLKEEHG IQLKMINLGG GFPANYIDKT
NELATYAEQI THFLKEDFGD DLPEVILEPG RSLLSNAGVL VSEVVLISRK SNTALERWVF
TDVGKFSGLI ETTDEAIKFP IYTDRTGELD KCVIAGPTCD SADIMYEHYS YGLPKDLAIG
DRMFWLTAGA YTTTYSAVCF NGFPPLKDYY L
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