| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3074 |
|---|
| Symbol | |
|---|
| ID | 4019600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3692470 |
|---|
| End bp | 3693228 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637957126 |
|---|
| Product | uridine phosphorylase |
|---|
| Protein accession | YP_564075 |
|---|
| Protein GI | 91794424 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG2820] Uridine phosphorylase |
|---|
| TIGRFAM ID | [TIGR01718] uridine phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0126681 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGATG TATTTCACTT AGGTTTAACT AAAAAAATGT TAGATGGTGC CAGCTTAGCA
ATCGTTCCAG GTGATCCTGA GCGTGTTAAG CGTATTGCTG AGTTGATGGA GAATGCTACT
TTCCTCGCGA GCCACCGTGA ATACACTAGC TACTTAGCTT ATATCGATGG CAAGCCTGTG
GTGGTTTGTT CAACGGGTAT TGGTGGTCCA TCGACGTCTA TTGCGGTAGA AGAGTTGGCG
CAACTTGGCG TGCGTACCTT CCTTCGCGTG GGTACTACTG GTGCTATCCA GCCTCATGTA
AATGTCGGTG ATGTGATAGT GACTCAAGCA TCGGTACGTT TAGATGGCGC GAGCTTACAT
TTTGCGCCAC TTGAGTTCCC AGCCGCTGCA GATTTTGAAT GTACCACAGC TATGGTCGCA
GCAGCTCGTG AAGCGGGTCT TGAGCCACAC GTTGGTATTA CAGCATCTTC TGATACTTTC
TATCCAGGCC AAGAGCGTTA TGACACAGTG TCGGGCCGTG TGACCAGCCG TTATGTGGGC
TCGATGAAAG AGTGGCAGTC TATGGGCGTG CTGAACTATG AAATGGAGTC GGCAACCTTG
TTTACCATGT GTGCGACTCA AGGCTGGAAA GCGGCTTGTG TTGCTGGCGT GATTGTAAAC
CGTACCCAGC AAGAAATTCC TAACGAAGCG ACCATGAAGC AAACTGAAGT GAGCGCAGTG
TCTATTGTGG TTGCGGCTGC GAAGAAGTTA TTAGCATAA
|
|---|
| Protein sequence | MSDVFHLGLT KKMLDGASLA IVPGDPERVK RIAELMENAT FLASHREYTS YLAYIDGKPV
VVCSTGIGGP STSIAVEELA QLGVRTFLRV GTTGAIQPHV NVGDVIVTQA SVRLDGASLH
FAPLEFPAAA DFECTTAMVA AAREAGLEPH VGITASSDTF YPGQERYDTV SGRVTSRYVG
SMKEWQSMGV LNYEMESATL FTMCATQGWK AACVAGVIVN RTQQEIPNEA TMKQTEVSAV
SIVVAAAKKL LA
|
|---|
| |