Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3064 |
Symbol | |
ID | 4019590 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 3678896 |
End bp | 3681034 |
Gene Length | 2139 bp |
Protein Length | 712 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637957116 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_564065 |
Protein GI | 91794414 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAACTAA CACCGATTTA CCTCGCCGTA ATAACCAGCA TAGGCCTATC TGGCCATGTC GCTGCCGAGC AAAAAGTCTC GCTAGATAAT AATGAGAATA TCGAAAAAAT TGAAGTCACA GGCCGTTATA TTCAAGGCTA TAATCCACAT TCTGTCAGCG GCGCCTCCCG CTTAGATTTG GCCATTAGCG ACATTCCTCA GTCAGTGTCT GTCATTACCA GCGCCCAGCT CGATGACTTT CAAATCAAGG ATATTAACAG CGCATTAGAC ACGGCAACCG GTGTTAACGT AGAACGTATT GAAACTGACA GAACCTACTA TACTGCCCGT GGTTTTGATA TTACCAACTT TCAGATTGAC GGTATTGGCT TGCCTTTAAC CTCAGGCAAT AACCACTCAG ATGAAGACAC CGCGATTTAT GACAGAATAG AAGTCATTCG CGGTGCTAAT GGCTTGATGA CGGGAGTGGG CAATCCGTCT GCAACGGTTA ACTTTATCCG TAAACGCCCC ACTGCCGATA ACATGCTGTC ATTAAGCACA AGCTATGGCA GCTTCAATGA TCTGCGTTTA GAAGCCGACG GTTCAGCACG CCTTAATGAC ACCTTTGCTA TCAGAGCGGT AGCCGCCAAC CAAACTAAAG ACTCTTATTT AGACAGATAC CAAACAGATA AAGATGTTTT TTACCTCTTT TTAGAAGCCA ACTTAACTGA TGATACCAAT GTGTCATTGA GCCATAGCTA TCTTAATAAT GATGCTAAGG GCAACAACTG GGGCGCACTG CCGCTGTTTT ACATCGATGG CAGCGCAACT CATTATGCCA GATCAACCAA CACCTCAGCG AATTGGTCAA ACTGGCAAGT CGTGAAAAAT AATACTGTGC TAGAGCTAAG CCATTTTTTT AATGATAACT GGCGATTACG CGCGACCTAT TCACACAAAA CCACAGATGA AGATACCGAG CTATTCTACG TCTTTGGCAC CCCAGATAAA GCGACTGGTC TTGGATTGAC TGGTTATGGC AGTGAGTACG ACCTTGATGA TAAGCATGAT TTATTTGATG TGTATATCAA TGGCGACATC AGCCTCTTTG GCCGAGAGCA CCAACTGGTA TTTGGACTCA ATCATTCAAA AATGAGCTAT ATAGACAGCT CGCTCTATGA CTACAGCACA GGTAATGGCT TTCCAGTCAT GCCAGATCTC AACAGCTGGG ATGGCAACAC GTCCATGCCA ACATTCAAAG ATAATCCCCG TGGCAGTGAT GTTAGCCGCG AGCAACAAGC CGCTTATTTT ACAGCTCGTT TCAACTTAAT AGATGATTTA CACTTAATGT TGGGTGGACG TTATAACGAT TGGCAACAAC AAGGCATTAC CTACGAAACC AAGCAAGATG CCGATGATAA TGAGTTTATT CCTTTTGCAG GTGTGGTTTA TCGCTTACTG CCAGAGCTTG TTGCTTACAC CAGTTACACC GAAACCTACA TGGTGCAAAA AGAGCTAGAT ATTAACAATC GCATACTCGA CCCTGTCACT GGCGAAAGCC GCGAAATCGG CCTTAAGAGC GAACTCTTTA ATGGTAACTT GATAGCAAGC CTTGCCTATT TCGATGTGAA ACAAACTAAC TTGGCAAAAC CCGATCCAAT TACCGCATTA CTGCCTCCTA CAGAGCAGCG CTATATCGGT ATTGACGGGA TCCACAGCCA TGGTATTGAG CTTGATATTG CCGGCGAAAT CTACCCTGGC CTTAATACCA GCATAGGTTA TACCGACTTT ACTATCACAG GTGACGATCA AGTCTCAGCC TATACCCCAA GTAAAATCCT TAAATTAGCT GCAACTTATG AATTTAGCAG CATCGACGGT TTAAGCATTG GCATGAATGC ACGCTGGCAA GATGATATTT CCCGTGAACA AGGCGTAGTC ACCGCAGGCT TTAATAAAGC AGGGGAGAAA ATAATCACTA CTCAAGAAGC CTATGCTGTC ATCGATTTAA TGGCTAAATA CCAGTTCAAT GACAATCTAA CTCTGGCCTT ACACGCTAAG AATGTCACCG ATGAGAAGTA CATTAATAGC CTCTATTGGG CCCAAGGTTA TTACGGTGCC CCCGCAAATT ATGGTGCAAC ATTAAGCTGG AAAATGTAA
|
Protein sequence | MKLTPIYLAV ITSIGLSGHV AAEQKVSLDN NENIEKIEVT GRYIQGYNPH SVSGASRLDL AISDIPQSVS VITSAQLDDF QIKDINSALD TATGVNVERI ETDRTYYTAR GFDITNFQID GIGLPLTSGN NHSDEDTAIY DRIEVIRGAN GLMTGVGNPS ATVNFIRKRP TADNMLSLST SYGSFNDLRL EADGSARLND TFAIRAVAAN QTKDSYLDRY QTDKDVFYLF LEANLTDDTN VSLSHSYLNN DAKGNNWGAL PLFYIDGSAT HYARSTNTSA NWSNWQVVKN NTVLELSHFF NDNWRLRATY SHKTTDEDTE LFYVFGTPDK ATGLGLTGYG SEYDLDDKHD LFDVYINGDI SLFGREHQLV FGLNHSKMSY IDSSLYDYST GNGFPVMPDL NSWDGNTSMP TFKDNPRGSD VSREQQAAYF TARFNLIDDL HLMLGGRYND WQQQGITYET KQDADDNEFI PFAGVVYRLL PELVAYTSYT ETYMVQKELD INNRILDPVT GESREIGLKS ELFNGNLIAS LAYFDVKQTN LAKPDPITAL LPPTEQRYIG IDGIHSHGIE LDIAGEIYPG LNTSIGYTDF TITGDDQVSA YTPSKILKLA ATYEFSSIDG LSIGMNARWQ DDISREQGVV TAGFNKAGEK IITTQEAYAV IDLMAKYQFN DNLTLALHAK NVTDEKYINS LYWAQGYYGA PANYGATLSW KM
|
| |