Gene Sden_3064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3064 
Symbol 
ID4019590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3678896 
End bp3681034 
Gene Length2139 bp 
Protein Length712 aa 
Translation table11 
GC content44% 
IMG OID637957116 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_564065 
Protein GI91794414 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACTAA CACCGATTTA CCTCGCCGTA ATAACCAGCA TAGGCCTATC TGGCCATGTC 
GCTGCCGAGC AAAAAGTCTC GCTAGATAAT AATGAGAATA TCGAAAAAAT TGAAGTCACA
GGCCGTTATA TTCAAGGCTA TAATCCACAT TCTGTCAGCG GCGCCTCCCG CTTAGATTTG
GCCATTAGCG ACATTCCTCA GTCAGTGTCT GTCATTACCA GCGCCCAGCT CGATGACTTT
CAAATCAAGG ATATTAACAG CGCATTAGAC ACGGCAACCG GTGTTAACGT AGAACGTATT
GAAACTGACA GAACCTACTA TACTGCCCGT GGTTTTGATA TTACCAACTT TCAGATTGAC
GGTATTGGCT TGCCTTTAAC CTCAGGCAAT AACCACTCAG ATGAAGACAC CGCGATTTAT
GACAGAATAG AAGTCATTCG CGGTGCTAAT GGCTTGATGA CGGGAGTGGG CAATCCGTCT
GCAACGGTTA ACTTTATCCG TAAACGCCCC ACTGCCGATA ACATGCTGTC ATTAAGCACA
AGCTATGGCA GCTTCAATGA TCTGCGTTTA GAAGCCGACG GTTCAGCACG CCTTAATGAC
ACCTTTGCTA TCAGAGCGGT AGCCGCCAAC CAAACTAAAG ACTCTTATTT AGACAGATAC
CAAACAGATA AAGATGTTTT TTACCTCTTT TTAGAAGCCA ACTTAACTGA TGATACCAAT
GTGTCATTGA GCCATAGCTA TCTTAATAAT GATGCTAAGG GCAACAACTG GGGCGCACTG
CCGCTGTTTT ACATCGATGG CAGCGCAACT CATTATGCCA GATCAACCAA CACCTCAGCG
AATTGGTCAA ACTGGCAAGT CGTGAAAAAT AATACTGTGC TAGAGCTAAG CCATTTTTTT
AATGATAACT GGCGATTACG CGCGACCTAT TCACACAAAA CCACAGATGA AGATACCGAG
CTATTCTACG TCTTTGGCAC CCCAGATAAA GCGACTGGTC TTGGATTGAC TGGTTATGGC
AGTGAGTACG ACCTTGATGA TAAGCATGAT TTATTTGATG TGTATATCAA TGGCGACATC
AGCCTCTTTG GCCGAGAGCA CCAACTGGTA TTTGGACTCA ATCATTCAAA AATGAGCTAT
ATAGACAGCT CGCTCTATGA CTACAGCACA GGTAATGGCT TTCCAGTCAT GCCAGATCTC
AACAGCTGGG ATGGCAACAC GTCCATGCCA ACATTCAAAG ATAATCCCCG TGGCAGTGAT
GTTAGCCGCG AGCAACAAGC CGCTTATTTT ACAGCTCGTT TCAACTTAAT AGATGATTTA
CACTTAATGT TGGGTGGACG TTATAACGAT TGGCAACAAC AAGGCATTAC CTACGAAACC
AAGCAAGATG CCGATGATAA TGAGTTTATT CCTTTTGCAG GTGTGGTTTA TCGCTTACTG
CCAGAGCTTG TTGCTTACAC CAGTTACACC GAAACCTACA TGGTGCAAAA AGAGCTAGAT
ATTAACAATC GCATACTCGA CCCTGTCACT GGCGAAAGCC GCGAAATCGG CCTTAAGAGC
GAACTCTTTA ATGGTAACTT GATAGCAAGC CTTGCCTATT TCGATGTGAA ACAAACTAAC
TTGGCAAAAC CCGATCCAAT TACCGCATTA CTGCCTCCTA CAGAGCAGCG CTATATCGGT
ATTGACGGGA TCCACAGCCA TGGTATTGAG CTTGATATTG CCGGCGAAAT CTACCCTGGC
CTTAATACCA GCATAGGTTA TACCGACTTT ACTATCACAG GTGACGATCA AGTCTCAGCC
TATACCCCAA GTAAAATCCT TAAATTAGCT GCAACTTATG AATTTAGCAG CATCGACGGT
TTAAGCATTG GCATGAATGC ACGCTGGCAA GATGATATTT CCCGTGAACA AGGCGTAGTC
ACCGCAGGCT TTAATAAAGC AGGGGAGAAA ATAATCACTA CTCAAGAAGC CTATGCTGTC
ATCGATTTAA TGGCTAAATA CCAGTTCAAT GACAATCTAA CTCTGGCCTT ACACGCTAAG
AATGTCACCG ATGAGAAGTA CATTAATAGC CTCTATTGGG CCCAAGGTTA TTACGGTGCC
CCCGCAAATT ATGGTGCAAC ATTAAGCTGG AAAATGTAA
 
Protein sequence
MKLTPIYLAV ITSIGLSGHV AAEQKVSLDN NENIEKIEVT GRYIQGYNPH SVSGASRLDL 
AISDIPQSVS VITSAQLDDF QIKDINSALD TATGVNVERI ETDRTYYTAR GFDITNFQID
GIGLPLTSGN NHSDEDTAIY DRIEVIRGAN GLMTGVGNPS ATVNFIRKRP TADNMLSLST
SYGSFNDLRL EADGSARLND TFAIRAVAAN QTKDSYLDRY QTDKDVFYLF LEANLTDDTN
VSLSHSYLNN DAKGNNWGAL PLFYIDGSAT HYARSTNTSA NWSNWQVVKN NTVLELSHFF
NDNWRLRATY SHKTTDEDTE LFYVFGTPDK ATGLGLTGYG SEYDLDDKHD LFDVYINGDI
SLFGREHQLV FGLNHSKMSY IDSSLYDYST GNGFPVMPDL NSWDGNTSMP TFKDNPRGSD
VSREQQAAYF TARFNLIDDL HLMLGGRYND WQQQGITYET KQDADDNEFI PFAGVVYRLL
PELVAYTSYT ETYMVQKELD INNRILDPVT GESREIGLKS ELFNGNLIAS LAYFDVKQTN
LAKPDPITAL LPPTEQRYIG IDGIHSHGIE LDIAGEIYPG LNTSIGYTDF TITGDDQVSA
YTPSKILKLA ATYEFSSIDG LSIGMNARWQ DDISREQGVV TAGFNKAGEK IITTQEAYAV
IDLMAKYQFN DNLTLALHAK NVTDEKYINS LYWAQGYYGA PANYGATLSW KM