| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3061 |
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| Symbol | |
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| ID | 4019587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3674528 |
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| End bp | 3675937 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637957113 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_564062 |
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| Protein GI | 91794411 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGATAG CTCTTAGATT ACAGCTGATC GTGTATTTAT GTGCGCTGCT CATTTTAGGG
ATTAGTTCAT TTTTGTATAA GGCCTACGAT TATCAGGAGT TTATTTATAA CCAACTTAAT
CAAGTGATGG AAATTCAACT CAATATAGAT AATTTAAGAA GCCAGTTGTG GCTTTATCAA
GAATATTCAG ATGAGTTGAG TCTGAAAGTG CTTAATAATC GTCAAGCGAA TTTAGCTCGT
CAGCTACAAA TCCCCATGGG CTGGGATGAA AAGCAGCAAA GACTGTTGAA TAATCTGAAC
CGGCTAAATA CTAACACTCG GGTCTTGGTC AATACTCAGC TGCCCGCGGA AACTGCATTA
AATCGATCGG CTAAATTAAA CTCGAACAAA TCTGCAAGGG GCAATACTCG CTTCAGTGAA
TCTGAATATG CTGAATATAT TGCGCTGGAA GACGCTCATG CTGCATCAAA CAATGAGACC
TTTAATACCA AGGCGAGCTT GTTAGAGGCA AGGTACAATA TGATCACTCA AGAGATGACA
GAAGATGTGT TTAGCTTGCA CCATATGTCC ATTCAGCGGG CCAAGTACAT CCAGCGAAAC
CTGATTTATG TCACAGGTGT CTGCTTGTTG TTGATGACAT TACTGGTTAC CGTGTTTTCT
TATTTAACCC TTAGGCGTTT TCGTAGCGCA ATTCATTCAT TAGTGACTGG GGTTAAAGTG
CTGGCGAAAG GCGATCTCAA TAGCAAGATA GAGGTCAATA ATCAGGATGA GTTTTCTTGC
CTTGCCCAAG ACTTTAACGA GATGAAAGCC TCACTGAAGG GAATGACCAT CAAGAAGGAT
GAACTTAAGC GGGAAGTGGA AAAGCAGACG CAGATTCTTA CTGAGCAACA GATCAAACTT
AAGTTTTTGG CTGAGCACGA TGAGCTGACG GGGATTTTTA ATCGCCGTGC CTTAATTAAG
CAAGTGGATA TTGCCATCGC CCGTGCTATA CGTTCTAACT CTCAAGCGGC ATTACTCTTT
CTCGATCTGA ATAATTTTAA GACGATTAAC GATACCTTAG GTCATGGCGT TGGAGATAAG
GTGATTATGA CCATAGCTAA ACGCTTGCAT GACAATCTAC GTAATACCGA TATTGTTGGA
CGCTTAGGAG GGGATGAATT TGTTGTTTGG CTGGATGTCA TCGCCCACAG ACAAGATGTT
ATCAACAAAA TTAATCAATT ACAGGCTTTA ATAAACGAGC CCATCACAGT AGAAGAGCAT
GAGTTGAAAA TAGGGGCCAG CTTTGGAGTC AGCCTATTAC CCACAGATGG CAACGCCAGT
GGCTTATTGT TAAGGGCTGC TGATACGGCC ATGTATCATG CCAAGATGCA TTCAAAAACA
GATTATTATT TCTTTGAAGA CATGGAGTAG
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| Protein sequence | MMIALRLQLI VYLCALLILG ISSFLYKAYD YQEFIYNQLN QVMEIQLNID NLRSQLWLYQ
EYSDELSLKV LNNRQANLAR QLQIPMGWDE KQQRLLNNLN RLNTNTRVLV NTQLPAETAL
NRSAKLNSNK SARGNTRFSE SEYAEYIALE DAHAASNNET FNTKASLLEA RYNMITQEMT
EDVFSLHHMS IQRAKYIQRN LIYVTGVCLL LMTLLVTVFS YLTLRRFRSA IHSLVTGVKV
LAKGDLNSKI EVNNQDEFSC LAQDFNEMKA SLKGMTIKKD ELKREVEKQT QILTEQQIKL
KFLAEHDELT GIFNRRALIK QVDIAIARAI RSNSQAALLF LDLNNFKTIN DTLGHGVGDK
VIMTIAKRLH DNLRNTDIVG RLGGDEFVVW LDVIAHRQDV INKINQLQAL INEPITVEEH
ELKIGASFGV SLLPTDGNAS GLLLRAADTA MYHAKMHSKT DYYFFEDME
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