| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3048 |
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| Symbol | |
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| ID | 4019574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3659143 |
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| End bp | 3659820 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637957100 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_564049 |
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| Protein GI | 91794398 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATT TTGTTTACCA GCCCCCTACG ACACCTTGGC TTGAGATTTT ACATCAAGAT
AAAGACGTGT TGGTGGTTAA TAAGCCTTCA GGACTATTGT CTGTTCCTGG ACGAGACCCC
GCTCACAGCG ACAGCATCTA CAGTCGAGTT CTCGCGCAAT TTCCTAACGC GCATATCGTC
CACAGGCTAG ACATGGCAAC ATCTGGGGTC ATGGTGGTAG CACTGAGACG CAGTGCAGAG
CGAGAGCTAA AGCGCCAATT TCATGACCGT GAAACCAAGA AAGTCTATTA TGCAAGGGTC
GCAGGTCACT TAAGCCCTGT CCATACCCGT GTCGATTTAC CGTTAATTTG TGATTGGCCA
AATAGGCCCA AACAAAAAGT GGATCATAAA CTCGGTAAGC CGTCCAGCAC GCTAGTTAAA
ATCATTAGTT ATGGTAAGCG CTCTACATTG GTCAAGCTTA GCCCTATTAC TGGGCGCTCT
CACCAACTCA GGGTACATAT GATGGCGCTG GGTCATCCTA TCCTAGGTGA TGGCTTCTAT
GCTGATGCGC TCGCTAAACG CTTAGCGCCA AGGCTGTTAC TTCATGCTGC AGAGCTCACT
TTCTGCCATC CTTACTCCCA AGATACGTTG CACTTTAGTG CCGATGCCAG CTTTATGCTG
CCGGAAGGTG AACAATAA
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| Protein sequence | MTDFVYQPPT TPWLEILHQD KDVLVVNKPS GLLSVPGRDP AHSDSIYSRV LAQFPNAHIV
HRLDMATSGV MVVALRRSAE RELKRQFHDR ETKKVYYARV AGHLSPVHTR VDLPLICDWP
NRPKQKVDHK LGKPSSTLVK IISYGKRSTL VKLSPITGRS HQLRVHMMAL GHPILGDGFY
ADALAKRLAP RLLLHAAELT FCHPYSQDTL HFSADASFML PEGEQ
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