| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3028 |
|---|
| Symbol | |
|---|
| ID | 4019553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3637273 |
|---|
| End bp | 3638082 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637957079 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_564029 |
|---|
| Protein GI | 91794378 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.458756 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT TAAGTTTCTC CAACATCATG CTGTGGCTAG GGCTGATTTT CCTCTATGCC
CCCATGTTCA TCTTGATTTT TTACTCCTTC AACGGCTCAA AGCTGGTGAC TGTGTGGGGC
GGTTTCTCCA CTAAATGGTA CAGCGAGTTG TTTGAGGATC AACAGATCTT GGACGCCGTC
TGGACCAGTC TGCAAATTGC CTTCTACAGC GCCAGCATGG CGGTGATCAT AGGCACTATG
GCAGCCTTCG TGATGACCCG CTTTCGCCGC TCTTGGGGCA AGATAACCCT GTCAAACATG
ATAACCGCGC CCTTGGTGAT GCCAGAGGTG ATCACAGGTT TATCCTTGAT GCTGCTATTT
GTGCATATGG CGGACTTAAT TGGCTGGCCG ACCCAGCGGG GCATGTTAAC CGTTTGGCTG
GCTCACTCGA CCTTCTGCGC CGCGTATGTG GCGGTGGTGG TGTCATCTAG GCTTCGCGAC
CTTGATTTAT CCATCGAAGA AGCGGCCATG GACTTAGGGG CTACGCCCTT TAAGACCTTT
ATGCAGATAA CTGTGCCTAT GATAGCGCCC GCGCTGTCGG CGGGTTGGTT ATTGTCATTT
AGTTTGTCCT TGGATGACTT AGTCATCGCA AGCTTTGCCT CGGGACCTGG GGCGACTACC
TTGCCGATGA TCGTCTTTTC CTCGGTGCGC CTCGGGGTCT CGCCTAAGAT CAATGCGCTA
GCGACCTTGA TCATTTTGAG CGTGTCCTTG ATCGCCTTCC TGTTGTGGTT TTTTGCCAGA
AGGGCAGAGA AGAAAGCCAA TATGCAGTGA
|
|---|
| Protein sequence | MKKLSFSNIM LWLGLIFLYA PMFILIFYSF NGSKLVTVWG GFSTKWYSEL FEDQQILDAV
WTSLQIAFYS ASMAVIIGTM AAFVMTRFRR SWGKITLSNM ITAPLVMPEV ITGLSLMLLF
VHMADLIGWP TQRGMLTVWL AHSTFCAAYV AVVVSSRLRD LDLSIEEAAM DLGATPFKTF
MQITVPMIAP ALSAGWLLSF SLSLDDLVIA SFASGPGATT LPMIVFSSVR LGVSPKINAL
ATLIILSVSL IAFLLWFFAR RAEKKANMQ
|
|---|
| |