| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2959 |
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| Symbol | |
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| ID | 4019484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3541966 |
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| End bp | 3542844 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637957010 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_563960 |
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| Protein GI | 91794309 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.000656128 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGGGGAT CCGCCAGCAC TTACATTAAA CAACGAGGGT TAACCGAACT TAAAATTGCC
GGTTGGGGCG GGCCTGCGGA TGAGCTCAGG TATGGGATAA CCCAAGAGCT ACAACACCTG
ATACCTAGGC TAAATTATGC GTTAAGAGGT ATTAGTGAGC AGCAACGATT AGCCATATAC
AATAAATGGA ACAATGTGTC GGTTGTCGAA GACATTGATT ATCAAGTCGC GATACAAATT
TTAGGTATCT TAGCGGCAAT AATTTTTGTG CTTATGCTTC GAAATTACAA TATCAAAATT
TATTCTCAAG CGTTGGAAGT AAAGAATAAA CAACTCGAAG AACTTAGGGG CAACCTAGAG
AGAAAAAATC AGCAGCTTGA CTTCCTGTCA GCCCACGACC CTTTGACTAA GCTCTACAAC
AGGCATTATT TCAACAGCCA ATACATAGAC AAAAAGCAAG ATGAAAATAA TGTTGAACCC
ATGTGCTTGA TCATTATGGA TGTGGACTAT TTTAAACTTA TCAATGATAA CTTTGGCCAT
AACACGGGTG ATATTGTGCT AGCTAAGTTG GCCGAATTAT TGATCAATAC AGTACGAGGC
TCTGACGTTG TTACTCGCTG GGGCGGTGAA GAATTTATCA TATTGTGCCC TAAGTTAGCT
CTCCAAAGTG CCTGTGAACT CTGTCAAAGA TTAGCCATTC AAATTCAACA AACTCAATTC
ACTGACGGCG TAAAAATCAC CTGTAGCTTC GGTGTGGCAC AACGTGAAGC TAACGAGTCT
ATTTTGATGT GCTTAGACAG AGCCGATAAA GCGCTTTATC GAGCGAAAGA TGGAGGCCGG
AATCAAACTT GCATCGATAC AAAAGCGGTT GATTTTTAA
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| Protein sequence | MRGSASTYIK QRGLTELKIA GWGGPADELR YGITQELQHL IPRLNYALRG ISEQQRLAIY
NKWNNVSVVE DIDYQVAIQI LGILAAIIFV LMLRNYNIKI YSQALEVKNK QLEELRGNLE
RKNQQLDFLS AHDPLTKLYN RHYFNSQYID KKQDENNVEP MCLIIMDVDY FKLINDNFGH
NTGDIVLAKL AELLINTVRG SDVVTRWGGE EFIILCPKLA LQSACELCQR LAIQIQQTQF
TDGVKITCSF GVAQREANES ILMCLDRADK ALYRAKDGGR NQTCIDTKAV DF
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