Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_2949 |
Symbol | |
ID | 4019474 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 3526639 |
End bp | 3528051 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637957000 |
Product | ATP-dependent RNA helicase DbpA |
Protein accession | YP_563950 |
Protein GI | 91794299 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTTGA GTAACTCAGA CAGCCCAATA GTCGCTAACA CGGCGTTTTC ATCGCTTTCC CTTAAAACTG AACTGCTTGA GAACCTCAAG ACCATGGGTT ATGAATCCAT GACTCAAATC CAAGCTCAGA GCTTACCGCC AATTTTGGCC GGTGATGATG TGATTGGCCA AGGCAAAACC GGCTCGGGTA AGACTGCCGC TTTCGGCTTA GGTTTGTTGA ATAAATTGGA TGTGAAGCGT TTTCGCATTC AGACCTTGGT CATGTGCCCA ACGCGTGAGT TGGCCGACCA AGTCGCCAAG GAGATCCGCA CCTTGGCTCG CGGCATTCAC AATATCAAGG TATTAACCTT GTGTGGCGGC GTCCCTATGG GGCCACAAGT GGGCTCCCTT GAACATGGTG CCCATATTAT TGTTGGCACT CCAGGGCGCA TAATCGATCA TTTAGATCGC AACCGTTTAG ATTTAAGCAA TGTGAACATG CTAGTGCTCG ATGAAGCGGA TCGCATGCTA GAAATGGGCT TTCAAGATCA CATAGATGCC ATTATTGAGC AAACTCCCCG TGAGCGTCAG ACGCTGTTAT TCAGCGCCAC CTTCCCAGAT CAAATTAAAT CCATTGCCGA TGAGATAATG TACAAGCCTG TGATGGTCAA AGTCGAGTCG ACCCATGACG CCATCAGCAT AGAACAACAT TTCTATCAGC TTGAAGACAA CAAATCACGC CTAGAAGCGC TGCGTTTATT GCTGCTCAGT GAGCAACCTG AAAGTGCGGT GGTATTTTGC AATACCAAAC GTGAGACTCA GCAGGTGGCT GATGAATTAG CCGAGTTTGG CTTTAGTGTG CTGGCACTGC ATGGGGATCT GGAGCAAAGG GATCGCGATC AAATGTTACT GCAATTTGCC AACCAGAGCG CACGTATTCT GGTGGCCACC GATGTGGCGG CTCGCGGCTT AGATATCGAT GCCTTAGATG CGGTATTTAA CTTCCACCTA GCCTATGATG CCGAAGTGCA TCTTCACCGC ATTGGCCGTA CAGGCCGTGC TGGCAGTACC GGCGCCGCCT ACAGTTTTAT CGGGCATGAT GACGGCTATA AGGTCGCCAT GATTGAAGAA ATGTTAAATA TTGAAATAGT CACCGAAGCC TTGCCAGGCT TGAACGTGCT AAATAAAACC CCGCTGGCGG CCAACATGGT GACCATTCAA ATTGAAGGCG GCAAGAAGCA GAAAATTCGC CCTGGCGACA TAGTCGGTGC CCTTACTGGT GATAACGGGT TAGATGCCAA CGATATCGGT AAAATCAAGG TAACGGATAT TCGCGCCTAT GTGGCAGTAA AGCGCAATGT GTCTAATCAA GCGCTGAATA AATTGAACAA AGGTAAGCTT AAGGGCCGCA GCTACCGCGC CTGGCTTTTA TAA
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Protein sequence | MTLSNSDSPI VANTAFSSLS LKTELLENLK TMGYESMTQI QAQSLPPILA GDDVIGQGKT GSGKTAAFGL GLLNKLDVKR FRIQTLVMCP TRELADQVAK EIRTLARGIH NIKVLTLCGG VPMGPQVGSL EHGAHIIVGT PGRIIDHLDR NRLDLSNVNM LVLDEADRML EMGFQDHIDA IIEQTPRERQ TLLFSATFPD QIKSIADEIM YKPVMVKVES THDAISIEQH FYQLEDNKSR LEALRLLLLS EQPESAVVFC NTKRETQQVA DELAEFGFSV LALHGDLEQR DRDQMLLQFA NQSARILVAT DVAARGLDID ALDAVFNFHL AYDAEVHLHR IGRTGRAGST GAAYSFIGHD DGYKVAMIEE MLNIEIVTEA LPGLNVLNKT PLAANMVTIQ IEGGKKQKIR PGDIVGALTG DNGLDANDIG KIKVTDIRAY VAVKRNVSNQ ALNKLNKGKL KGRSYRAWLL
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