| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2938 |
|---|
| Symbol | |
|---|
| ID | 4019463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3510244 |
|---|
| End bp | 3511137 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637956989 |
|---|
| Product | universal stress protein |
|---|
| Protein accession | YP_563939 |
|---|
| Protein GI | 91794288 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA TACTGGTTAT TGCCGATCCC TTAGCACAAT TACAAAGCGC GTTCATTAAA
GCCTTATCCT TGGCCCATAG CTCCTGTGCC AGCATTCAGG TGCTAGCCGT TTGCTATGAA
TCTTTCGCCG AACTAAATGA TTCAGAACTC GATGGCGATA GTATTAAAAA CCAAATTATT
CAGCAGTATG AGGATTTTTG GCAGAAACAA ATTAACCAAT ACGACTCGAG TCTCACCATA
AGCTTACAGG TGGTTTGGCA TAAGCATTTG CATGACAGCA TCATTCAAGA ATGCAAAGCC
AATAATTATG ATTTAATCAT CAAAACCGGC CATCGCAGTG AAACTAGTTT TTACACCCCC
ACGGATTGGA TGCTGTTTCG TGATTCTCCC ATTCCGGTTT ATGTGGTTGA ACCGCGAAGC
CATAAGTGCG AAAAAGTGGT TTTGGTGGCC TTGGATGCCT TGGCAAAATC CACCGAAAAA
CAAGCGCTCA ATAGCCAGTT GCTGGAATCG GCATTTCGCC TCGCGGTTCA AACTGATGCC
AAGTTGCACT GCGCCTATGT GATAAAAATC CCCACGCTAT TAAAAGATTT TGATCTGGTC
GACCCAAAAA CCTACGCCAA TAAAATCAAA GTCCGCGCAC AGGAAAATAT GGCTGAACTC
CTCGCCGACT ATGACATAAC CAAAGAATGT ATTCACATTG AAGAAGGAGA GCCTTGGGGC
GTATTAGCTA ACCTCTCCAA AAAACTTCAT AGCCAATGCT TAGTGGTCGG TTCTATGGGC
CGTAAAGGCA TAGTGGGTAA ACTTGTCGGC AATACCGCAG AGCAAATTAT TCACATTGCC
CGTACTGATC TCCTCGTCAT AGGGCCAGAT GTAGACAGTA AATCACTGCT TTAA
|
|---|
| Protein sequence | MDKILVIADP LAQLQSAFIK ALSLAHSSCA SIQVLAVCYE SFAELNDSEL DGDSIKNQII
QQYEDFWQKQ INQYDSSLTI SLQVVWHKHL HDSIIQECKA NNYDLIIKTG HRSETSFYTP
TDWMLFRDSP IPVYVVEPRS HKCEKVVLVA LDALAKSTEK QALNSQLLES AFRLAVQTDA
KLHCAYVIKI PTLLKDFDLV DPKTYANKIK VRAQENMAEL LADYDITKEC IHIEEGEPWG
VLANLSKKLH SQCLVVGSMG RKGIVGKLVG NTAEQIIHIA RTDLLVIGPD VDSKSLL
|
|---|
| |