| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2932 |
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| Symbol | |
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| ID | 4019457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3500240 |
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| End bp | 3501727 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637956983 |
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| Product | sigma-54 factor, interaction region |
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| Protein accession | YP_563933 |
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| Protein GI | 91794282 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00176909 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTCAAA AAACAAACAC AACAACGTCT AGCGCGCATT TTTTGCCAGA AAACACTTTG
TTACTGGACG CCGTCGGCGA AGGTATCTAT GGCTTCGACT TACAGGGTAA TGCGGTATTT
ATTAACCCAG CTGCGCAAAG AATGACGGGC TGGCGTAATG ACGAACTCTT AGGGAAAAAC
ATTCACAATT GTCACCACCA TAGCCATGCG GATGGCAGCC CTTACCCCCA AGAATCTTGC
CCTATTTACC AGACCTTAAA AGATGGCGTG GCACGGGAAG TGGCCCAGGA TGTGTTCTGG
CGTAAAGATG GCAGTAGCTT CCCCGTGCTG TACAGCTCTA CCCCTGTGTA TCAAGGGAGC
GTCATGGTCG GCGTGATCGC GATATTTCGC GACATAAGCG TGCAAAAACA AACTGAGCTC
TCCCTAAGGC AAGCACTTAA CCAGGTACAG GCCCTGTCGG AACAACTCGC CGCAGAAAAT
CATGAGCTGC AGCAGGCATT AGCGGATAAA ACCGGTAACA TGGGCATTAA AGGCAGCAGC
CCAGTGATGG CGCATTTACT ACAGCAAATA CACCTAGTCG CCAATACCAA CAGCACAGTG
CTTATCTGTG GTGAAAGCGG TACAGGTAAA GAGCTTGTCG CCCGCAATTT ACATCAACTT
AGCCGCCGTA AACATAAGCT AATGGTAAGC GTAAATTGCG CCGCCTTTTC ACCGTCATTA
CTGGAAAGTG AACTCTTTGG CCATGAAAAA GGCGCCTTTA CTGGTGCTAA CACTCAGCGC
AAAGGGAAAT TTGAACAGGC GGATAAGGGC ACACTGTTTC TCGATGAAGT TGCAGAGCTT
TCCCTTGAGG CCCAGTCTAA ATTACTCAGA GTGATCCAAG AGCAAGAGTT CCAGCGTCTA
GGCGGCAGTA GTAACATTAA AATAGATATT CGCCTCATTG CGGCCAGTCA CCACAATTTA
CTCGAACGAG TAGAGCAAGG ACTATTTCGC ATGGATCTCT ACTATCGCTT AAATGTCTTC
CCCATACATG TACCGCCCCT TAGGGATAGG CTTGAAGACA TGCCAGAGCT AGTAGAGAGC
ATGTTGTTGA ATATTAGTAA AAAACTAGCC AAAAAAATTA CCTGTGTGAG TCAAGCAGGC
ATGGCCGAGC TTAAGGCCTA CCATTGGCCT GGCAATGTAC GAGAATTACA GAACATACTC
GAGCGTGAAG CCATATTGAG TCAGGCAAGT GAGCTTGATA TCCATCAATT GCCCTTTAAA
GAGCTGTCAA AAATCAAGCC TTCAGCTAAC AGACAAACCT TAGCGCAAGC ACAGGCCACT
CATATTCGCC ATACCTTAGA ACAACTCAAT TGGCAGATCT CAGGTGAACA TGGCGCAGCC
AAACAACTTG GGCTGCCTGC GAGCACCTTA AGATCGAAAA TGCAAAAACT CGGCATAGTG
CGACAAGATA CGACATCTCG ACAGCCCAAT AATGATAAGA ATCCCTAA
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| Protein sequence | MVQKTNTTTS SAHFLPENTL LLDAVGEGIY GFDLQGNAVF INPAAQRMTG WRNDELLGKN
IHNCHHHSHA DGSPYPQESC PIYQTLKDGV AREVAQDVFW RKDGSSFPVL YSSTPVYQGS
VMVGVIAIFR DISVQKQTEL SLRQALNQVQ ALSEQLAAEN HELQQALADK TGNMGIKGSS
PVMAHLLQQI HLVANTNSTV LICGESGTGK ELVARNLHQL SRRKHKLMVS VNCAAFSPSL
LESELFGHEK GAFTGANTQR KGKFEQADKG TLFLDEVAEL SLEAQSKLLR VIQEQEFQRL
GGSSNIKIDI RLIAASHHNL LERVEQGLFR MDLYYRLNVF PIHVPPLRDR LEDMPELVES
MLLNISKKLA KKITCVSQAG MAELKAYHWP GNVRELQNIL EREAILSQAS ELDIHQLPFK
ELSKIKPSAN RQTLAQAQAT HIRHTLEQLN WQISGEHGAA KQLGLPASTL RSKMQKLGIV
RQDTTSRQPN NDKNP
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