| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2931 |
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| Symbol | |
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| ID | 4019456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3497247 |
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| End bp | 3499859 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637956982 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_563932 |
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| Protein GI | 91794281 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000063349 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGACCG GAATTAAAAA GAATTTTTAT TTGAGCTCGT TGAGTTTAGC CGTTTCTTTA
GCCTTAACTG GTACCTTAGC AAGTGCAGGT GCATACGCCG CCGCCGACGA AGAGGAAGTC
AAGGTTGAAA AGAGAGAAAA CGTTGAAAAA ATCGCTGTCG TAGGTACTCG CGCCGCGCCG
CGCTCAATTG GTGATTCACC AGTGCCTATC GATATTATCA GCAGTGATGA CCTTAAGAAA
AATGGCTCCA CTGATATGAT TGACATGCTA GTGACTTCAG TACCTTCATT TAACTCTCGT
GCTCAACCTA TCAGTGATGC GGCTACTTTG ATCCGTCCTG TCAACCTTCG TGGCCTGCCG
TCTGACAGTA CTTTAGTTTT GGTTAACGGC AAGCGTCGCC ACCGTGCCTC CGTCATTGCA
TTCCAAGGTG GTGGCATTAA TGATGGTGCC CAAGGCCCTG ATATGTCAGT GATCCCAACC
GCAGCCTTAA AGCAGGTTGA AGTACTGCGT GATGGCGCCG CGGCTCAATA CGGTTCAGAT
GCGATTGCGG GTGTAATGAA CTTCGTGTTG AAAGATGATA ACGAAGGTGG CTCGCTGACT
TACACTAAGG GTGAGTATTA TGAAGGCGAT GGCACCACAA CAACCATAGA TGGCAATATA
GGTCTACCGC TCACTGATGA TGGTTTCATC AACATTAGTG GCCAGTATAA AATGGCTGAT
GCCACTAGTC GCAGTGTGCA GCGTCCCGAT GCTGCTGCTA TCGCTTATGG CACCGATGGA
ACAGATGGAA ACCCCTATAT TCAAAATCCA GCTCAAACTT GGGGCAACCC TGAGCTAAGC
GATGATTTTT CTGTCTTTGT AAACTCAGGT TTAGAGGTTA ATGATACCAC TCGCTTATAC
GCCTTTGGCA ACATGTCATC GCGCAAGGCT GTGGGGGGGT TCTATTATCG CAACCCACAG
GATCGTGGTT TAGTATATTC GAAAATTAAT GAACAAGATC CGAATGATCC CAATGATGAT
ACAAGAGAGC TATTGGTTGG TGCGTTAAAT GGTGACCAAT CTTCTTGTGG AGTTGTTTCG
GCAGAAGTAC CAAATGTGCT TCAAACGGCA GCTTATAAGG CCATGGTTGC AGATCCAAAC
TGTTTTTCCA TGAATCAAAT TCGTCCCGGC GGTTATACAC CTCAGTTTGC TGGTAAAATT
GAAGACAGTT CTTTCGTTGC CGGTATTAAA GGTGAGTTAG GCGAGTGGAA CTATGATGCT
AGCGCCGGTA CAGGTAATAA CCAAGCCAGC TTTGGTCTGA TGAACTCATT GAATCCATCA
TTAGGATTAG AGACTCCCAC TAATTTCGAT ACCGGTGCTT ATACGCAAAA TGAGTCAAGC
ATCAATATTG ATTTCTCTCG CTTTTTAAAT ATAGGTTCTA TCGAAGATGT GAGCTTTGCC
ACAGGTTTTG AATGGCGTGA AGAATCATTT AAAATTACTC AAGGTGAAGA AGCTTCTTGG
GTCGCCGGTC CCTATGCAGA GCAAGGCTTT AATATTGGCT CTCACGGCTT TAAAGGTTTT
GGTCCTGAGT CTGCAGGTAA GAATACCCGT AACAATATAG GTATTTATAC CGACGTTGAA
GCTTATTTGA ATGATGATTG GTTACTTGGC GTGGCACTAC GTTATGAGGA TTTCTCGACC
TTTGGCGATA CCTTAAATTA TAAGATCACC GCCCAGTATA TCGCTACCGA TGAGTTGTCG
TTCCGTGCGT CGCACAGCAC AGGTTTCCGT GCCCCAACAG TGGGCCAGGA AAACGTGGTG
AATACCCAGA CGTCAATTGT TAATGGTGAA CTAATTCAAA CTTTTATTGC ACCGCCAACG
AATCCTTTAG CGGCATTCTA TGGTGGCGAG GTACTGCAAC CCGAAGAGTC AATGAGCATT
GCGGTGGGCT TTGTGTATGA ATATGAGGAT TTCTTCTTAA CCTTCGATTA TTACAACATC
GAAGTGGAAG GCCGTATCTC TCAGTCGAGC CAGAAGGATG TATTAGCGAA AGATTATGAT
GCACTAAGAG CCGCTGGGGT TGAATTCCCT GAGTTGATTT CAGCTGTGAC ATACTATGCT
AATGATTTCG ATACCACGAC TCAGGGTATA GATATTGTTG CCAACTATAA TATGGAAGCC
TTTTCTGGTG ATGCTAAGCT AAGCTTGGCT TACGGCTGGA CTGATACCAG TGTTGATAAA
TTCAGCCCTG ATACAACTGA TGAAGGCAAG GTTCGTCGTT TAGAAGATGG TATACCTGCA
CACAGAGCCA CCTTGACTTG GGCCCAGTCT TGGGATGACA TTAACGTGTC AGTGCGCAGT
AACTACTTCG GTGAATACTA TGCCACCCAT GCTGATGACA CTTCAGATTG GGGTTCAGAA
GATGTAGGCT CAGCTGTGAC CTTCGATCTT GATTTCAGCT ATGCCTTAAA TGATGCGATT
ACCTTATCTG TGGGTGCTAA TAACATCTTC GATAAAAAAG CGCAGAAGCT GAAAGATGGT
ACTTTAGGTG AGTTAGGGGC GGTTTATTAC GAAAGTGGTC CATATGACTA CAATGGTGGC
TTCTACTATG GCCGGGTTAA CTATCGCTTC TAA
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| Protein sequence | MMTGIKKNFY LSSLSLAVSL ALTGTLASAG AYAAADEEEV KVEKRENVEK IAVVGTRAAP
RSIGDSPVPI DIISSDDLKK NGSTDMIDML VTSVPSFNSR AQPISDAATL IRPVNLRGLP
SDSTLVLVNG KRRHRASVIA FQGGGINDGA QGPDMSVIPT AALKQVEVLR DGAAAQYGSD
AIAGVMNFVL KDDNEGGSLT YTKGEYYEGD GTTTTIDGNI GLPLTDDGFI NISGQYKMAD
ATSRSVQRPD AAAIAYGTDG TDGNPYIQNP AQTWGNPELS DDFSVFVNSG LEVNDTTRLY
AFGNMSSRKA VGGFYYRNPQ DRGLVYSKIN EQDPNDPNDD TRELLVGALN GDQSSCGVVS
AEVPNVLQTA AYKAMVADPN CFSMNQIRPG GYTPQFAGKI EDSSFVAGIK GELGEWNYDA
SAGTGNNQAS FGLMNSLNPS LGLETPTNFD TGAYTQNESS INIDFSRFLN IGSIEDVSFA
TGFEWREESF KITQGEEASW VAGPYAEQGF NIGSHGFKGF GPESAGKNTR NNIGIYTDVE
AYLNDDWLLG VALRYEDFST FGDTLNYKIT AQYIATDELS FRASHSTGFR APTVGQENVV
NTQTSIVNGE LIQTFIAPPT NPLAAFYGGE VLQPEESMSI AVGFVYEYED FFLTFDYYNI
EVEGRISQSS QKDVLAKDYD ALRAAGVEFP ELISAVTYYA NDFDTTTQGI DIVANYNMEA
FSGDAKLSLA YGWTDTSVDK FSPDTTDEGK VRRLEDGIPA HRATLTWAQS WDDINVSVRS
NYFGEYYATH ADDTSDWGSE DVGSAVTFDL DFSYALNDAI TLSVGANNIF DKKAQKLKDG
TLGELGAVYY ESGPYDYNGG FYYGRVNYRF
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