| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2906 |
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| Symbol | |
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| ID | 4019431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3468765 |
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| End bp | 3471386 |
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| Gene Length | 2622 bp |
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| Protein Length | 873 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637956957 |
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| Product | endonuclease/exonuclease/phosphatase |
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| Protein accession | YP_563907 |
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| Protein GI | 91794256 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2374] Predicted extracellular nuclease |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.435339 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATGG TAACTAAGTT AACAAGTTTG TCTCTGGCAA TGGCTGCAGC CATGCCAATG
ATGGCAAGCG CTGAAGTAAT GATTACCGAA TATGTTGAAG GTAGCTCAAA TAACAAAGCG
ATTGAAATTT ATAACAGCGG CACTGCCACG GTTGATTTGA CGGGTTACAA ACTAGTTCAA
TATAGAAACG GTGATACAGC AGCAACAGAT ATGGCGCTAT TAGATGGTCA GACTATCGGC
GCAAAAAAAT TAAAAATTAT TAAAAACCCA AGTGCAGCAC TGGGTTTAGC CGCTGGTGTT
GATGCCATCG ACGGCAACGC TATTTATTTC AACGGCTCTG ATGCGGTTGC TTTGATGAAA
GACGGCGTTA TCGTCGATGT GATTGGTGCT ATTCCAACGC CTACGGATTG GGGCAAAGAT
GTCACAATCC AGCGCAAGAT GGATGCATTG TCAGCGAGCA TGACATTTGA TGAGACTAAG
TGGACCACTC TACCTCAAGA TACATTTTCA GGCCTAGGTA GCCTAGGTGC AGCTCCAGCG
CCAAGCGCGC CAGTATTTAG TTGCAAAGGC GCGAAAATTG TACCTATATA TCAAGTGCAA
GGTGCGGGCG AATCAAGCCC ACTTGTTCCT GAAGGTAAGT ATGAATCAGA TGCGGAAGTC
ACAGTACGTG GTGTTGTCAC TGCCCGTGGT GATAGCTTAT TTAAAGGCTT CTATCTTCAG
GAAGTGAATG GCGATAACTC ACCTTATACT TCAGATGGTG TATTCGTATT CTTAGATGCT
GCTGCGCCAG ACTCGATTCA ACCTGGTGTT GAAGTTTGTG TTCAAGGTAA AGTTAAAGAG
TATTACGGCC TCACTCAAAT CGATATCAAG GCTGATAAGA AGTTTGAAGT GGGCGCTCAA
GGTGAAGCAC CAGCTGCAAC CCCTTTCTAT GTTGCCGATG GTGAAACCTT AGCTGAGGCC
TTAGAGCGTT ATGAAGGCAT GAATATCGAG CTAGATGCAG GCAGCGATAT GAAAGTGAGC
CGCACTTTCA GCTACGATTA TGCTGCCCGT CGCAACAACA TGCTTGCCTC TTACAAAGCA
CCATTAATGA AGCCGACTCA GCTTTATCCT GCCATGTCTG ATGAAGCCAT TGCATTGGCT
AAAGTGAACG CGGCTAATCA ATTATTCATC GAGTCAGATT TTAAAGCCGC CGATGGCGTT
GTACCTTACT TCCCCGATTT TAATGCCGAA ACGGGCTATA TCCGTACTGG CGATCAACTG
ACTAACCTGC AAGGTGTGGT GGGTTATAGC TACGGTGCTT ATCGTTTAGT GGCGACTAAT
ACCGTTGTCG CTGGTGATTT CATCCGTAAC AATGACAGAA CCGATGCTCC TGAAGTGGCA
ACACTTGGGG ACATTCGTGT TGCCAGTTTT AACGTACTTA ACTTCTTCAA CGATGCAGTG
GGTGGTGATG CGAATCCAGG TGGTAGCAAT CGTGGTGCAT TAACTGAAGA AGATATGCTA
AAGCAGCGTA CTAAGATAGT TAGTGCAATT ACTGCCATGA ACGCCGATAT CGTTGGTTTA
ATGGAAATTG CTAACAATGG CTTTGGCGAG CAGAGTGCAA TTCAAAACCT ATTGACGGCA
TTAAATGCTG AACTCACAGC CGATGAAGCC TATAGCTTTG TAGAGCTTGA AGCGGCTGAT
AAGTTTGAAG GTAAATACTT TGGTAGTGAT GCCATCACAG TAGGCATGTT ATACCGCGCC
AAAACCGTGA GTTTAGCCAG CCCTGCCAAG GTGATTATTA CTCCAGAACA ACACGCTGCA
GAAGGCGTTG CGACTCGTGA GAAAGCTGGC AAGGTTGAAA CTAATACGGG TAATGATGCA
TATCAACGTC ACAGCCTCGC GCAAACCTTT TCTATTCAAG ATAAAAAGTT AACTGTCGTG
GTTAACCACT TTAAGTCTAA AGGTTCAGGC TGTTTAGAGG ATTGGGTGAG CTTTGAAGAC
AAGTCAGATC CCGCTGACAT GCAAGGTAAG TGTAACGAGT TCCGCGTTTC TGCTGCAAAA
GTATTGGGTG AGTCACTCAA AGATGTCGAA GGTGATTTGC TGGTCATTGG TGACTTAAAT
GCCTATGGCA TGGAAGATCC GCTTCGTGTG TTAACCGATT ATGATGCAAG TCAATCTGAT
CGCGATATCG TTACAGCCTC TTGGACTACC TTAAACGGTA AGATCTATGA AAAAGAAGGC
ACTAAGATTG AAAAAGGCTA TGGTCTAATT AATTTAAACA CCAAAGCTCA TGGCGTAAGT
ACTTATTCTT ACAGCTATAA TGGTGAATTA GGCAATCTTG ATCATGCGTT AGGTAACGCG
AGTCTTGCGG CAAAAGTCGT GGGCATAGAA GATTGGCATA TCAACTCTGT TGAGTCGACG
CTATTCGAAT ACCCAAGCAA ATTTACTGGT GATTTATTGA AGTCTGATAA TGCGTTTTCT
GCTTCAGATC ACGATCCTGT GATTGTAGCG TTAAGCTACC CAGCGCCAGT GGTCACTCCT
GAGCCAGAGC CAAAACCAGA AGTCGTCAAA CGCAGTGGTG GTAGCCTAGG TTACTTAGTC
CTGATGATGC TTGCAGGTTT TGGTCTTCGT CGTCGCAGCT AA
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| Protein sequence | MKMVTKLTSL SLAMAAAMPM MASAEVMITE YVEGSSNNKA IEIYNSGTAT VDLTGYKLVQ
YRNGDTAATD MALLDGQTIG AKKLKIIKNP SAALGLAAGV DAIDGNAIYF NGSDAVALMK
DGVIVDVIGA IPTPTDWGKD VTIQRKMDAL SASMTFDETK WTTLPQDTFS GLGSLGAAPA
PSAPVFSCKG AKIVPIYQVQ GAGESSPLVP EGKYESDAEV TVRGVVTARG DSLFKGFYLQ
EVNGDNSPYT SDGVFVFLDA AAPDSIQPGV EVCVQGKVKE YYGLTQIDIK ADKKFEVGAQ
GEAPAATPFY VADGETLAEA LERYEGMNIE LDAGSDMKVS RTFSYDYAAR RNNMLASYKA
PLMKPTQLYP AMSDEAIALA KVNAANQLFI ESDFKAADGV VPYFPDFNAE TGYIRTGDQL
TNLQGVVGYS YGAYRLVATN TVVAGDFIRN NDRTDAPEVA TLGDIRVASF NVLNFFNDAV
GGDANPGGSN RGALTEEDML KQRTKIVSAI TAMNADIVGL MEIANNGFGE QSAIQNLLTA
LNAELTADEA YSFVELEAAD KFEGKYFGSD AITVGMLYRA KTVSLASPAK VIITPEQHAA
EGVATREKAG KVETNTGNDA YQRHSLAQTF SIQDKKLTVV VNHFKSKGSG CLEDWVSFED
KSDPADMQGK CNEFRVSAAK VLGESLKDVE GDLLVIGDLN AYGMEDPLRV LTDYDASQSD
RDIVTASWTT LNGKIYEKEG TKIEKGYGLI NLNTKAHGVS TYSYSYNGEL GNLDHALGNA
SLAAKVVGIE DWHINSVEST LFEYPSKFTG DLLKSDNAFS ASDHDPVIVA LSYPAPVVTP
EPEPKPEVVK RSGGSLGYLV LMMLAGFGLR RRS
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