| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2894 |
|---|
| Symbol | |
|---|
| ID | 4019419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3457374 |
|---|
| End bp | 3458312 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637956946 |
|---|
| Product | Dyp-type peroxidase |
|---|
| Protein accession | YP_563896 |
|---|
| Protein GI | 91794245 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2837] Predicted iron-dependent peroxidase |
|---|
| TIGRFAM ID | [TIGR01413] Dyp-type peroxidase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCGC AAACTATGCC TCGCGAACAA TTAGGGATTT GTGCTGAGAT AAACTTACAC
AGCGTTTATT TGATGTTTAA TGCCATCGAA GGAGAAGAAA ACCACCTTCG TCCTTGTATT
GCCAATGTCG CCGAGTATAT CCATGAATTA GCAGATCAAT ATGGCGACAG TGCTTTTAAT
GGTTTCGTGG CCATAGGGGC TAATTTTTGG GATACCTTTT ATCCTGCAGC TCGCCCAGCA
CTACTCAAAC CCTTTCCTGC CATGTCTAAA GACAACCGCG AAGCTCCTGG GTTAGAGTTC
GATCTGTTTG TGCAGTTACG CTGCGATCGC TACGATGTGC TGCACTTGGT GGCCAATGAA
ATCAATCAAA TGCTAGAAGG TCTAGTGGAG TTGATGGAAG AAGAGCGGGG TTTCCGTTTT
ATGGACAGCC GCGATTTAAC CGGTTTTGTC GACGGTACTG AAAACCCCAA AGGCCAGCAT
CGTCAGCAAG TGGCCTTAGT GGGCAATGAG GATATCGGCT TTAAAAATGG CAGCTATGCC
CATGTGCAAA AGTTTGCCCA CGACTTAAGC AGTTGGCAGA GATTAAGCGT TAAAAAGCAA
GAGGATATTA TTGGTCGTAC TAAGTCAGAT AATATTGAAT ACGCCTCAGA AGATAAGCCA
CTGACGAGCC ACATCAAGCG GGTTAACCTT AAAAACGATC AGGGTGAGCC TATGGAGATT
TTGCGTCAAA GCATGCCCTA TGGCTCCCTA AAAGAACAAG GGCTGATGTT TATCTCTTTG
TGCCATACCC CAGACTACTT TGAAAAAATG CTTCATAGCA TGGTACATGG CGATGGCGCG
GGTAATCACG ATCACTTGAT GAATTTCACC CATGCGCTAA CGGGTTCTTC CTTCTTTGTG
CCCTCGGTAG ATTTTTTAGC CCAGTTTGAA GAAGAATAG
|
|---|
| Protein sequence | MEPQTMPREQ LGICAEINLH SVYLMFNAIE GEENHLRPCI ANVAEYIHEL ADQYGDSAFN
GFVAIGANFW DTFYPAARPA LLKPFPAMSK DNREAPGLEF DLFVQLRCDR YDVLHLVANE
INQMLEGLVE LMEEERGFRF MDSRDLTGFV DGTENPKGQH RQQVALVGNE DIGFKNGSYA
HVQKFAHDLS SWQRLSVKKQ EDIIGRTKSD NIEYASEDKP LTSHIKRVNL KNDQGEPMEI
LRQSMPYGSL KEQGLMFISL CHTPDYFEKM LHSMVHGDGA GNHDHLMNFT HALTGSSFFV
PSVDFLAQFE EE
|
|---|
| |