| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2887 |
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| Symbol | pdxA |
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| ID | 4019412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3450314 |
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| End bp | 3451300 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637956939 |
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| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
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| Protein accession | YP_563889 |
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| Protein GI | 91794238 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
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| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000000594828 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCAAAC GTATCGCTAT TACGGCAGGG GAACCTGCCA GTATAGGGCC AGATCTTGTT
ATCACTCTAG CTCAGCAGGC TTGGCCTGCT GAGCTAGTCG TTTGTGCTAA CCCTGAATTA
TTGCTAGCTC GAGCTGCCAA GCTCGGACTA CCACTACGCC TCATCCCCTA TCACTCAGAA
AACAAACCAC AGCCACAGGC CGCCGGAACT CTCACCATAG CACCTTTCGA ACTAGCCGCT
GAAGTCGAAT GTGGTGTGCT CAATGAGCTC AATAGTGCTT ATGTCGTGGA TACCTTACGC
TTTGCTGGCG AAAAGAACAT GAGTCGTGAA TTTGATGCTG TGGTGACCGG CCCTGTGCAT
AAAGGCATCA TCAATCAGGC GGGTATTGCC TTTAGCGGGC ATACAGAATA CTTTGCTGTG
CAGGCAAACT GTCAAGATGT GGTGATGATG CTGGCCGCCC CTGGGTTGCA GGTGGCTTTG
ATGACTACCC ATATTCCCTT GGCCTACGTT GCTAAAGCTA TCACCCGGGA AAGATTACAT
CATATTATCC ATATTTTGCA TAAAGAGCTT AAGAGCAAAT TTGGTCTAGG TTCCCCCAAG
ATTTATGTCT GCGGCTTAAA CCCTCATGCC GGCGAAGATG GTCATATTGG CCGAGAAGAG
CTAGACGTAA TGATCCCTGC CCTGAATGAG CTAAGAGCGC AAGGCATACA GCTAGTCGGA
CCTTTGCCGG CTGATACCTT GTTTCAGCCA AAATATTTAC AGGACGCCGA TGTGATACTC
GCTATGTATC ACGATCAAGG TCTACCTGTG CTAAAATCTT TGGGTTTTGG TAAATCTGTC
AACATCACTT TAGGCCTACC TTATATTAGG ACTTCAGTGG ATCATGGCAC AGCCTTAGAA
TTGGCAGGTA CTGGCTTAGC CGATTCTGGC AGTTTTACCT GCGCCTTAAA CAAAGCCATT
GAACTGGCCT CAAAAGTAAG TAACTAA
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| Protein sequence | MTKRIAITAG EPASIGPDLV ITLAQQAWPA ELVVCANPEL LLARAAKLGL PLRLIPYHSE
NKPQPQAAGT LTIAPFELAA EVECGVLNEL NSAYVVDTLR FAGEKNMSRE FDAVVTGPVH
KGIINQAGIA FSGHTEYFAV QANCQDVVMM LAAPGLQVAL MTTHIPLAYV AKAITRERLH
HIIHILHKEL KSKFGLGSPK IYVCGLNPHA GEDGHIGREE LDVMIPALNE LRAQGIQLVG
PLPADTLFQP KYLQDADVIL AMYHDQGLPV LKSLGFGKSV NITLGLPYIR TSVDHGTALE
LAGTGLADSG SFTCALNKAI ELASKVSN
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