| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2790 |
|---|
| Symbol | gltB |
|---|
| ID | 4019309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3333056 |
|---|
| End bp | 3337504 |
|---|
| Gene Length | 4449 bp |
|---|
| Protein Length | 1482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637956836 |
|---|
| Product | glutamate synthase subunit alpha |
|---|
| Protein accession | YP_563792 |
|---|
| Protein GI | 91794141 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGT ATCACCCCAG TTTTGAGCGA GACAATTGTG GCTTTGGGCT TATTGCACAA
ATGGATGGCG AACCCAGCCA CAAAATAGTG CGCACCGCGA TTCATGGCCT AGACAGAATG
AAACACAGAG GCGGTATTGC CTCCGATGGC CGTACCGGTG ATGGCTGTGG TTTATTAATG
CAAATGCCCA GCGCCTTTTT TGAAGCCATA GCCGCAGAGA ATGACTGGCA CCTTAGCCGT
AAATTTGCTG TTGGCATGCT ATTTTTAAGT CAAGATGAAA CCCTCGCCCA GCAGGCTAAA
CAGCTATTAG AAAAAGAACT GCAACGTGAA ACCTTAAGCG TAGCGGGCTG GCGTAAGGTC
CCTATCGACC CCTCGGTGCT GGGTGAAATA GGCCGTAACA GCTTGCCACA AATTTACCAA
GTCTTGATTA ACTCACCCGC GGGTTGGCGT GAGAAAGATT TAGAGCGCCG CCTTTATATG
GCTCGCCGGC GTTTAGAGCA GCAAATTGTC AATGATGATG ACTTCTATGT CGCCAGCCTT
TCTGGCCAAG TCATCGTCTA TAAAGGCCTG ATGATGCCGG CTGATCTGCC CTCCTTCTAT
ACGGACTTGG CGGACATTCG CCTTAAAAGC GCCATTTGCT TATTCCACCA GCGTTTTTCA
ACTAACACCT CTCCTAAGTG GCCCTTAGCC CAGCCGTTTC GCTTCTTGGC TCACAATGGT
GAAATCAATA CCATCACAGG CAACCGTCAG TGGGCCCGCG CCCGCGCCTA CAAATTTAAC
TCACCTTTGC TGCCAGACTT ACAACAGGCC GCGCCTTTTG TTAATGAAAC CGGCTCAGAC
TCTTCATCAC TGGATAACAT GCTAGAAATG TTATTAAGTG GCGGCATGGA CTTGTACCGC
GCCATGCGCC TGCTTATTCC ACCAGCATGG CAGTCTAATC CTGAGATGGA CGATGAGCTA
AAAGCCTTCT ACGACTTTAA CTCTATGCAC ATGGAGCCTT GGGATGGCCC TGCGGGCATA
GTGATGACCA ACGGCCGTCA TGCCGCCTGC GCCGTAGACA GGAACGGCCT GCGCCCATCG
CGCTATGTGA TAACCAAGGA CCGCATCTTG ACCTTGGCCT CAGAAGTGGG CATTTGGGAT
TACGCCGCCG ATGAAGTCAT AGAGAAAGGC CGCGTCGGTC CGGGTGAATT GTTAGTGCTA
GACACCTTAA ATGGCCGTCT GTACCAATCA TTTGAAATCG ATGATGACTT AAAGCGTCGC
CACCCTTACA AAGAGTGGAT GGCTAAAAAC AGCCAAACCT TGATCCCCGC AGAAGATGTG
GACACCAACA AGAAAGGCAA CAGCGAATTT TCGGCCACAA CCTTACTTAA GTATCAGCAG
CAGTTTGGCT TCACCCGGGA AGAGTTAGAA CAAGTGATTT GGGTGCTGGC AAGCCAAGGC
GAAGAAGCCA TTGGCTCCAT GGGGGATGAT ACGCCTATGG CGGTATTGTC GAAAAAATCA
CGCTCTCTGT ACGACTATTT CAGGCAGAAA TTTGCCCAGG TGACCAATCC ACCGATAGAT
CCACTGCGAG AAAAGCATGT GATGTCACTG GCCACCTGTG TCGGCCGTGA GCAAAACTTA
TTTAACGAAA CCACAGGCAA TGCCTATCGA GTGATGTTTA ACTCACCGAT TCTATTATTC
AGTGATATCG ACCAGTTATG GCATTTAGAC AGCAAAAACT ACCGCGCCGA TAGAGTTGAT
CTTAACTACG GCCAAGAGAT TGGCCTAGAG CAAGCCATTC GCACCATAGT CGATCAAGCT
GAGCGCTTAG CGCGCAGTGG CACCACCTTG TTGGTATTGT CAGACAGAGC CATAGGTGAG
CGATCCCTCA CTATCCCCGC CGCCATGGCC GTGGGTGCAG TGCAGCAGCG CTTAGTCGAC
CAAAGCCTTC GCTGCGATAC CAACATTATC GTTGAAACCG CATCGGCACG AGATCCTCAC
CACTTTGCTG TGCTGTTAGG TTTTGGCGCC ACGGCGATCT ACCCTTATTT AGCCTATGAG
TCTATCTCTG CCTTAGCCCA TATTCGCCAT GTCACAGATA CCGACAGCTT GATGCTGAAC
TACCGTTATG GCATCGAAAA AGGCCTGCGT AAAATCATGT CGAAAATGGG CATTAGTACT
GTGGGCTCTT ACCGCTGTAG CCAGCAATTT GAAGCCATTG GCCTTGCAAG CGATGTGATT
AAGCTGTGCT TTAATGGGGT CATCAGCCGC ATCGAAGGAG TCAGCTTTGA GGGCATCGAA
GCCGACCAAA GGCTGTTGCA TACTAGTGCC AATCGGCCGC ATTTACCGCT GCCACAAGGC
GGCTTGCTAA AATACGTCGA GGGCGGTGAA TACCACAGCT TTAACCCAGA TGTGGTCAAC
ACACTGCAGG CCTCCCTTAA GGATAAGGAT TACGCCAAGT ACAAAAGCTT CGCTAAATTA
GTGGATAACC GCCCCGTTGC CACCCTAAGA GACTTAATCG GCATCACGGC CCAGCAAAAA
GCCATAGATA TCACCAAAGT GGAAGCGGCC GAAAAACTCT ACTCACGCTT TGATAGCGCC
GCCATGAGCA TTGGCGCCCT AAGTCCAGAG GCCCACGAAG CCTTAGCCGT TGCCATGAAC
CGTTTGGGCG GCCGCTCAAA CTCGGGTGAA GGCGGTGAAG ATGCTAAGCG TTTCAACAGC
GAGCGCAACT CTGCCATTAA GCAGGTGGCC TCCGGCCGCT TTGGGGTCAC GGCCAACTAT
TTAGTCAATG CCGAAGTGCT GCAAATCAAA GTCGCTCAAG GGGCAAAACC CGGTGAAGGC
GGTCAGCTGC CTGGGCACAA AGTCAGTGTT GAAATTGCCG CCCTGCGTCA TGCACGCCCC
GGTGTCACCT TGATTTCACC GCCACCACAC CATGATATTT ATTCTATCGA AGATTTAGCC
CAGCTGATTT TCGACTTGAA ACAAATAAAC CCTAAGGCAC TGATTTCAGT TAAGTTAGTG
TCAGAGCCTG GGGTAGGCAC TATCGCCACT GGCGTGGCTA AAGCTTACGC GGACATGATA
ACCATCTCAG GCTATGATGG CGGCACAGGG GCAAGCCCTA TCACCTCGGT TAAATATGCG
GGTTCCCCCT GGGAGCTTGG TCTTGCCGAA GTGCATCAAT CCTTAGTCAC CAATGGCCTA
AGGCATAAAA TTCGCCTACA AGTCGACGGC GGCCTAAAAA CCGGCACCGA CGTGATTAAG
GCTGCGCTGC TTGGAGCCGA AAGCTTTGGC TTTGGCACTG TGCCCATGAT AGCGCTCGGC
TGTAAATACC TGCGTATTTG TCATCTGAAC AACTGCGCCA CCGGCGTTGC CACCCAAGAT
AAAAATCTGC GCGATAAGCA TTATCACGGC TTACCAGAGC GGGTGATGAC TTACTTTGAG
TTTGTGGCAC AAGAGGTGCG TGAATGGATG TCTGTACTGG GAGTCAGTCA ATTTGATGAG
CTAGTAGGCC GTAGCGATTG GCTAGTGGCA CTGGAAGGTC AAACCGATAA ACAGCGCGGC
CTTGATCTTA GCCCTATCTT GTTCAAGCCT AAACTGCCTG CCAGCACGGC GCTCACCTGG
CAAGAAATCA ACCCGCCAGA AGATAAGGGC GTGCTTAACC AAGTGTTATT GAATGACTGC
ATGCAAGCGG TAGACACTCG CCAAGGCTTC ACTGGCCAAT ACACTATCAA TAATACCGAC
CGCTCGGTGG GCGCGGCATT ATCTGGGCAT ATCGCCAATG CCCATGGCGC TAAAGGTGCA
CTTAAGCCCA TAGCACTTAA CTTTACTGGC AGTGCTGGCC AAAGTTTCGG TGTTTGGAAT
AGTCCTGGGC TTGAATTAAG CCTGTGCGGT GATGCCAACG ATTATGTGGG CAAAGGCATG
TCTGGCGGCA AGATAGTGAT CCACCCGCCC CTTGGCAGCC CATTTCAAAG TGAGCGCAGT
GCCATCATAG GCAATACTTG CCTCTATGGT GCTACCGGCG GCAAGCTTTA TGCCGCAGGT
CAAGCGGGTG AGCGTTTTGC GGTGCGAAAC TCTGGCGCCA TCGCCGTGGT TGAAGGGGTG
GGTGATAACG GCTGTGAGTA CATGACAGGC GGCATAGTGT TAGTCCTAGG TAAGACAGGG
GTTAACTTTG GCGCCGGCAT GACAGGCGGC TTTGCCTATG TGTTCGATCA ATTTGGCCGT
TTCCATCGCC GAGTCAACAC TGAATTGGTG GACACCCATA AACTGGATGC CCCTATCATG
CAGCAACACC TGAAACGTTT AATCGAAAGC CACGTCAGCG AAACCGGCAG TGAACATGGC
AAGAAAATAT TAAGTGATTT CAATAATTGG TTAGATTGCT TTGTGCTGGT CAAACCTAAG
AATATTGCCG TGAACGACTT GCTCAACATA GAGCAAAAAA GTTCCGAACT TGCCGTAAAA
GTGGGGTAA
|
|---|
| Protein sequence | MSLYHPSFER DNCGFGLIAQ MDGEPSHKIV RTAIHGLDRM KHRGGIASDG RTGDGCGLLM
QMPSAFFEAI AAENDWHLSR KFAVGMLFLS QDETLAQQAK QLLEKELQRE TLSVAGWRKV
PIDPSVLGEI GRNSLPQIYQ VLINSPAGWR EKDLERRLYM ARRRLEQQIV NDDDFYVASL
SGQVIVYKGL MMPADLPSFY TDLADIRLKS AICLFHQRFS TNTSPKWPLA QPFRFLAHNG
EINTITGNRQ WARARAYKFN SPLLPDLQQA APFVNETGSD SSSLDNMLEM LLSGGMDLYR
AMRLLIPPAW QSNPEMDDEL KAFYDFNSMH MEPWDGPAGI VMTNGRHAAC AVDRNGLRPS
RYVITKDRIL TLASEVGIWD YAADEVIEKG RVGPGELLVL DTLNGRLYQS FEIDDDLKRR
HPYKEWMAKN SQTLIPAEDV DTNKKGNSEF SATTLLKYQQ QFGFTREELE QVIWVLASQG
EEAIGSMGDD TPMAVLSKKS RSLYDYFRQK FAQVTNPPID PLREKHVMSL ATCVGREQNL
FNETTGNAYR VMFNSPILLF SDIDQLWHLD SKNYRADRVD LNYGQEIGLE QAIRTIVDQA
ERLARSGTTL LVLSDRAIGE RSLTIPAAMA VGAVQQRLVD QSLRCDTNII VETASARDPH
HFAVLLGFGA TAIYPYLAYE SISALAHIRH VTDTDSLMLN YRYGIEKGLR KIMSKMGIST
VGSYRCSQQF EAIGLASDVI KLCFNGVISR IEGVSFEGIE ADQRLLHTSA NRPHLPLPQG
GLLKYVEGGE YHSFNPDVVN TLQASLKDKD YAKYKSFAKL VDNRPVATLR DLIGITAQQK
AIDITKVEAA EKLYSRFDSA AMSIGALSPE AHEALAVAMN RLGGRSNSGE GGEDAKRFNS
ERNSAIKQVA SGRFGVTANY LVNAEVLQIK VAQGAKPGEG GQLPGHKVSV EIAALRHARP
GVTLISPPPH HDIYSIEDLA QLIFDLKQIN PKALISVKLV SEPGVGTIAT GVAKAYADMI
TISGYDGGTG ASPITSVKYA GSPWELGLAE VHQSLVTNGL RHKIRLQVDG GLKTGTDVIK
AALLGAESFG FGTVPMIALG CKYLRICHLN NCATGVATQD KNLRDKHYHG LPERVMTYFE
FVAQEVREWM SVLGVSQFDE LVGRSDWLVA LEGQTDKQRG LDLSPILFKP KLPASTALTW
QEINPPEDKG VLNQVLLNDC MQAVDTRQGF TGQYTINNTD RSVGAALSGH IANAHGAKGA
LKPIALNFTG SAGQSFGVWN SPGLELSLCG DANDYVGKGM SGGKIVIHPP LGSPFQSERS
AIIGNTCLYG ATGGKLYAAG QAGERFAVRN SGAIAVVEGV GDNGCEYMTG GIVLVLGKTG
VNFGAGMTGG FAYVFDQFGR FHRRVNTELV DTHKLDAPIM QQHLKRLIES HVSETGSEHG
KKILSDFNNW LDCFVLVKPK NIAVNDLLNI EQKSSELAVK VG
|
|---|
| |