Gene Sden_2771 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2771 
Symbol 
ID4019290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp3313142 
End bp3313762 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content46% 
IMG OID637956817 
Productsigma-E factor negative regulatory protein 
Protein accessionYP_563773 
Protein GI91794122 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00404119 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTAAAT CAGGTCAAGA ATGGGTGTCA GCAGCAGCAG ATGGTGAAGT CGATATACAG 
ACTATTGCTG AGTTAGCGGC TGATAAAACC TCTCATGGTA AGTGGCAAAA CTACCATATG 
ATAGGTGATG CCATGCGCAG TGAATTGCCC AAAGCGTTCG ATTTAGACTT GTCGGCTAAA 
ATTGCTGCGG CTATCGAGCT AGAGCCTGCT ATCCTTGCAC CTCAAACTAA TGTGCATCAG 
ACTAACATCA AGCCAACTCA TGACACGGGT TCAACAAATA ACGTCAGCAA GCTTGTGCCT 
TTATTTAAGC AACTCGGCCA ATATGCCATA GCAGCATCGG TGGCATTAGT TGCGGTTGTT 
GGTGTGCAGA ACTATAACCA AGATCAGGAC GCTCAGGCAC CTATGTCAGT GCTAACCACT 
CGACCTTTAG TGGGCAGTGT TTCTCCAGTG AGCCTGCAAA CCGGTGGCCA GCAATCTAAT 
ACTCAACAAG GCGTGAGCAA TGAGCAGATG GTGGAGCAAC GTCGCCGAAT CAATGCTTAT 
ATCCAAGATC ATATGTTACA ACAGAGGTTG AATCCTGGGG TAATATCAGC GGATAATAGT 
CCGCAAGATA CGGATAAGTA A
 
Protein sequence
MIKSGQEWVS AAADGEVDIQ TIAELAADKT SHGKWQNYHM IGDAMRSELP KAFDLDLSAK 
IAAAIELEPA ILAPQTNVHQ TNIKPTHDTG STNNVSKLVP LFKQLGQYAI AASVALVAVV 
GVQNYNQDQD AQAPMSVLTT RPLVGSVSPV SLQTGGQQSN TQQGVSNEQM VEQRRRINAY 
IQDHMLQQRL NPGVISADNS PQDTDK