Gene Sden_2766 details

Gene Information

• Locus tag: Sden_2766
• Symbol: rnc
• ID: 4019285
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 3307782
• End bp: 3308462
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 637956812
• Product: ribonuclease III
• Protein accession: YP_563768
• Protein GI: 91794117
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00000758412
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACCTG TAAAAAATTT AGCGCGTTTA AGCCGCACCT TAGGCTATGA ATTTACGAAT 
CAAGAGTTAT TAGTACAAGC ATTAACCCAT CGCAGTGCTG CCAATAAGCA TAACGAAAGG 
TTGGAGTTTT TGGGCGATTC TATTCTTTCC ATCGTGATTT CAGATGCCCT ATATCATCAG 
TTTCCTAAGG CGACGGAAGG TGATCTGAGC CGGATGCGCG CCACCTTAGT GAAAGGTGAA 
ACCTTAACCT TAATCGCCAA AGAGTTTAAG CTAGGGGATT ACTTGTTCTT AGGGCCAGGA 
GAGCTTAAAA GCGGCGGTTT TAGACGTGAG TCCATCCTTG CCGATGCGGT TGAAGCCATT 
ATCGGCGCGG TTTATTTAGA TGCCAATATG CAAGCTTGCG AAACATTACT GCTAAGCTGG 
TATAAGGTGC GTTTAGACGA AATCAAGCCT GGGATAAATC AAAAAGATCC TAAGACTATT 
TTGCAAGAAT ACCTACAAGG CTATAAAAAG CCTTTGCCTG ATTACCAAGT GGTACAGGTT 
GATGGTGAAG CGCACGATCA GACATTCACG GTGGAGTGTC GCATACAAGA TTTAGATGAA 
GTGGTCACAG GTGTGGGCAG TTCGAGAAGA AAAGCTGAGC AGCTTGCAGC GGCTCAGATA 
TTGGAGTTAA TTAATAAATG A 

 

Protein sequence

MEPVKNLARL SRTLGYEFTN QELLVQALTH RSAANKHNER LEFLGDSILS IVISDALYHQ 
FPKATEGDLS RMRATLVKGE TLTLIAKEFK LGDYLFLGPG ELKSGGFRRE SILADAVEAI 
IGAVYLDANM QACETLLLSW YKVRLDEIKP GINQKDPKTI LQEYLQGYKK PLPDYQVVQV 
DGEAHDQTFT VECRIQDLDE VVTGVGSSRR KAEQLAAAQI LELINK