Gene Sden_2753 details

Gene Information

• Locus tag: Sden_2753
• Symbol: rimM
• ID: 4019272
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 3295834
• End bp: 3296364
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637956799
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_563755
• Protein GI: 91794104
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00000227208
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGATA ACCAACAGCC AGTCGTACTG GGTAAATTAG GCTCCAGTCA TGGCATTAAA 
GGTTGGCTTA AAATCACTGC CTATACCGAT TCTGTTGAAG GCATCTTCGA TTACGTGCCT 
TGGTTGATTA AAGATCAAGG CGTGTGGCGT GAAGTTAAGG TCACCCAGTG GCGTTTTCAA 
GGTAAGGCTG TCGTGGCTGA ACTTGAGGGC GTAACCACCA GAGAACAGGC GCAAATGCTC 
ACAAATTGTG AAATTGCGAT CCTGCCTGAA CAAATGAAAG AGCTCGATGA TAATGATTTT 
TATCACAGGG ATCTTATCGG CTGTGAAGTG ACCAATGTAA ACGGCTATAA CTTAGGTATT 
GTCGATCAGA TCGTGGAAAC AGGATCGAAC GACGTACTGC TGGTTAAGGC TAACGCCAAA 
GATGCATTTG GCAAAGTGGA ACGTATGATC CCCTTTGTCA CCGAGCAATT CATCAAACAG 
GTGGACTTGC AAGGTAAACA GATTGTTGTG GATTGGGATC CTGACTTCTA A 

 

Protein sequence

MSDNQQPVVL GKLGSSHGIK GWLKITAYTD SVEGIFDYVP WLIKDQGVWR EVKVTQWRFQ 
GKAVVAELEG VTTREQAQML TNCEIAILPE QMKELDDNDF YHRDLIGCEV TNVNGYNLGI 
VDQIVETGSN DVLLVKANAK DAFGKVERMI PFVTEQFIKQ VDLQGKQIVV DWDPDF