| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2750 |
|---|
| Symbol | |
|---|
| ID | 4019269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3293399 |
|---|
| End bp | 3294490 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637956796 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_563752 |
|---|
| Protein GI | 91794101 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000255425 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAG ATACCATCAA TAACGTCCAT ATCAGTGCCG AGCAAGTATT AACCACACCG
TTGCAATTGA AGCAAGAACT GCCGTTATCT GAGCATGGCT ATCGCTATAT TCTTTCTGCC
CGTCAGACTG TGGCTAACAT AGTGCATAAG CAAGATAATC GAGTGCTTGT GATTGCTGGC
CCTTGTTCTA TTCATGATAT CAAGGCTGCG AAAGAATACG CCTTAAAGCT CAAAAAACTT
CATGATGAGC TTAAGGATGA GTTTTATATC CTAATGCGAG TCTACTTCGA GAAACCCCGC
ACTACCGTAG GCTGGAAGGG CTTAATTAAC GATCCCGATA TGGATGAGTC GTTCGATGTA
GAAAAAGGCC TAAGAATGGC TCGTGAGTTG ATGATTTGGC TCGCTGAGCT GGAACTACCG
GTAGCCACGG AGGCGCTCGA TCCTATCAGT CCACAATACT TGTCTGAGTT AGTGACTTGG
TCAGCCATAG GTGCTCGCAC CACGGAATCT CAGACCCACA GAGAGATGGC GTCTGGGCTT
TCAATGCCAG TCGGCTTTAA AAATGGCACA GATGGCAAGC TTGATGTGGC CATCAATGCG
CTTAAGTCCG CAGCCAGTAG TCACAGATTC ATGGGCATTA ACCAAGAAGG CCAAGTGTCC
TTATTACAAA CTAATGGCAA TCCAGATGGA CACATTATTC TGCGCGGCGG CCTAACCCCT
AATTATGATG CTGCGAGTGT GGCTGAGTGC GAAGCACAAA TTCATAAGGC TAATTTGCCA
GCACGCTTAG TTGTCGATTG CAGTCATGGC AATTCATCAA AAGATCATTT AAGGCAACAA
GCTGTGTGCG CGAATGTGTT TGAACAAATT AGCGACGGTA ATCAATCAAT TATCGGCGTG
ATGTTGGAGA GTAATTTACA GCAAGGCAAT CAAAGTAGTG ACAAGCCATT AGCCGAGCTT
AAGTACGGTG TATCGGTAAC AGATGCTTGT ATCGATTGGC AAACTACAGA GGTGATTTTG
CGCCAAGGGG CGCATGAGTT ATCTGCGGTC CTGCCAAGCC GTTTTACTAT TAAACAGGCG
GTAAATAGCT AA
|
|---|
| Protein sequence | MQQDTINNVH ISAEQVLTTP LQLKQELPLS EHGYRYILSA RQTVANIVHK QDNRVLVIAG
PCSIHDIKAA KEYALKLKKL HDELKDEFYI LMRVYFEKPR TTVGWKGLIN DPDMDESFDV
EKGLRMAREL MIWLAELELP VATEALDPIS PQYLSELVTW SAIGARTTES QTHREMASGL
SMPVGFKNGT DGKLDVAINA LKSAASSHRF MGINQEGQVS LLQTNGNPDG HIILRGGLTP
NYDAASVAEC EAQIHKANLP ARLVVDCSHG NSSKDHLRQQ AVCANVFEQI SDGNQSIIGV
MLESNLQQGN QSSDKPLAEL KYGVSVTDAC IDWQTTEVIL RQGAHELSAV LPSRFTIKQA
VNS
|
|---|
| |