| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2716 |
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| Symbol | |
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| ID | 4019235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3251526 |
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| End bp | 3255098 |
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| Gene Length | 3573 bp |
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| Protein Length | 1190 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637956762 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_563718 |
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| Protein GI | 91794067 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAACAA GAATTTGTGG CTTCAGTGTG TTTTTCGCCG TCCTTATGGG GGCTGCGACT
AGCCATGCCG ATGATACTGA GTTGTATGTG TTCGAGTCTT CATCCCGTTC GGGCGCCAGA
CCCCAAGTGA TGATTATTTT TGATAACTCA GGCTCGATGC GAACAGTGGA ACCCGATGCT
ACGGCATTTT ACGATCCTAA TGTGATTTAT CCCGCAGTCG GTAGTGGCAA TGCCCTGCAA
GAGCGTATGG TTTATTTTAC TAAAGGTGGC ATAGACAATA CGGCTATGCC AGTACCGGAT
AGCCCCTCAG AGAGCCGCCG TTTTTTAAGT GACATCAACG GCTGTGAAAC CTCTTGGAAT
TATTTGAATA CTTATGGGGT GTTTACTGGT TTTTTCCGTG AATATTCGTT TTCTGGCCAG
AACGGCACCT GGCAAGAGGT TCCTGATAAT AATGGCGCCA ATGTCACTGT GATCGATTGT
TTCGATGATA TCGAAGCCAA AAAATGGAAA AATGCGCCAG GTCAACCCAC AGGTTTTCCA
GTCGACAGTG CAGGTAATAA GCAAAACCCA ATCCGTTATA CTCCTATTTC GGCAAGCTCT
ACTCAGGCAC AAATTGATGC CGCTATTATT AAAGCCAAGC AAACGGGCTT CGGTACCGGT
AAAGCATTAA CACTTTATAC TGATAACTAT CTTCGTTGGT ATCATGGCGA TCAAGCTAAC
GTTCCTAAGA GTCGGTTAGA TATTGCCAAG GAAGTGATCA AAAACACCAT AGTGACCACC
CCAAGTGTCG ATTTTGGCCT AACCGTGTTT AACATTAATG CGTTTAGTGA AGGTGATGCC
GATGGCGGAC GCATAGTGTC AGGGATCAAA ACCATGACAG AAGCAAACAA ACTCGCTTTG
CTGAACACTG TAGCGGGCTT AGATCCTGAA ACTAACACCC CATTGTGTGA AACCTTATAT
GAAGTGCAGC AATATTTTGG CGGCAAAACA CTCACCTTTG GTAATAAAGA CAAGAAACCC
AGTGGTTACA GTTATACGCC TAACACCCCG CCAAGGGATA CATCCATAGA GCAGTCAGGA
AAATACATCA GTCCATTTAA GGAGTGCCAG AATCTTGCTT ATGTGGTGTA TATTACCGAT
GGTGTGCCCA CCTTAGACCA AAATGCCAAT AATCTTGTGA AGGCATTGCC TAATGCAGAT
CAAACTGCAT ACAAAAACAC TAATCCTAAT TTCAGCAGCT ATTTACCTAA TTTAGCTCAG
TGGATGAATA ACAACGATGT CAACGCTAAC TTAGTGGGCG AACAGAAGGT AAAAACCTTC
ACCATAGGTT TTAGTGATGG AGCAGCAGAC GCCGCGCCTC TATTAATTAA AACCGCAGAA
CTTGGTGGCG GCAAATACTT CGCAGCTAAA GGCGCTGCTC AACTACAGGC TGCGCTGCAA
CAAGTGTTTA CCGATATTCT AGAGGTTAAC GCCAGTTTTA CTTCACCTTC AATTGCCAGT
AATAACTTCG ATAGAACTGA AACCTTCGAC TCAGTTTATT ACGCCATGTT TTTACCCAAT
AGGGGGCCAC GTTGGTCGGG TAATTTGAAG AAGTTCAAGG TCACCAGCGG CGGTAAAATA
ATAGACAGTA AGAGTGTCGA AGCCATTGGC AGTGATGGTA ATATCAAGTC CTCAGCTTGC
TCATTTTGGA CCTCGAGTGC AATTTGTGCT TCTTCCAGTG ATGGCGGTGA TGGCAACGAT
GTCACCATAG GTGGCACGGC AGAAGCCTTA CGCCAAACGG CTAACCGTAA AATACTCTCT
AACCTTAGCG GTGGTTTGGT CAGTTTAACT AAGTCTGCTG CGGCAACGGT CGCAGGTGGT
AACGCCAATC TTGCCACTTA TATTGGTGTC GATGAAACCA GTTTGGATGC GCATTTTGAT
TGGCTGAAGG GGGCTGATGT CGATGATGAT AATGCCAACA ATAATCGCAC TGAAAACCGC
CGTGACATCA TGGGGGACCC TCTGCACTCA AAACCCCTAG CGCTTAACTT TGGTAGTGAG
AGTACTCCGG ATATTCGGGT CATTTTAGGC ACTAACCATG GTTTCTTGCA CATGTTTAAA
GATGCAGGAA CCACAGTTAC AGAGTCATGG GCTTTCATGC CCTATGAGTT ATTGCCAAAC
ATACGCCCAT TAAAAGCCAA TGTGCCCAGT GGTGTACATT CTGTGTACGG TATGGACAGC
TCTCCTGTCG CTTATGTGAA ACGCAGCGCC AGTGGCAGTA TAGAAAAAGC CTGGTTATTC
GTTGGCATGC GCCGTGGTGG GAAATCATAC TATGCCATTG ATATCACCAA CCCCGATAAT
CCGAGTTTTA TGTGGAAGGT CGATGCTAAC TCAGCAGGCA TGTCTGAATT GGGGCAAACC
TGGGCTAAAC CTGTTATCGC CTTTATTCCT GGCTGGCCAA CGGGCAATGC AGATGCAGGT
TCTGCTAAGC CTGTATTGAT CGTTGGCGCG GGTTATTCTC CAGCGACCAA AGATGGCGCG
GCTGTGGGGA CTGATGACAG CAATGGACGC GGCGCTTTTG TGCTGGATGC CGAAACAGGG
GCTTTAGTGC ATGCCTTTGG AACCTCCTCA GGAAGTAATG CGACTAAGTT GCCAGGTATA
ACCGACAGTG TGCCCAATAG TGTGGCGTTA CTGGATAGCA ACAACGACAG GTTAACCGAT
AGAATTTATC TAACCGATAC TGGGGCTAAC GTGTGGCGTA TCGATATGCC TAGCGCAAAT
CCTAGTGATT CAACCAGGCC ATGGACAGCC TTTAAGTTTG CAAGCTTAGG TGGCAGCTCG
GTTGCAACAG ATAGACGTTT CTTTGCCGAG GCAACAGTAG CTAAGACAGT GTTTACCAAT
ATTGCCCAAG TCACCACCAC GGATGCACAG GGGCAAAGCA CCACAGTTAT TAGTCATCAG
AATATTCCTT ACGATGCGGT AGTCATAGGT TCAGGCAACA GACCACACCC TTCAGACAAG
GGCCGTACGG ATATGTTTTT CACTCTGCAG GACAGGAACG TATCGTCTAA ATCATTTAAT
GGCACTACGG GTAATGAAAT CCCGGTCGTG CTCACTAAGG ATGATTTGTA TGATGTCACT
TCGGCGCCAC CCGTAGGTGA AGCACAAAAC TTAGCCTTTG GTGCTAAACG GGGTTGGTAT
TATGCCTTTG GCAGCCTAGG TGAAAAGAGC CTTTCGGCGG CGGCTATCAT TAGGGGGCGA
GTGTTTTTTA CTTCTTATGT TCCTGGTGAC AGTTCTTCAT CCAATCAATG CTTGGTAGCT
GGGGTGGGGC GTCTGTATGG ATTTGATCTT CATAAAGGCA CTCGCTCCTA CACCCAAACC
TATTTTGAGA TGGGGGAGCG AGTTCCTGAT ACTCCACAGC TAGTTATTCC TCCTGGCGGT
AAGAAATATA TGTACCTTAT CGGTATTGGG GATGCTGGTG ATGATATGGT GAAGAAAGAT
CCTGATCCCG AGGATGATCC AGAAGATTGT GTTGAAAATT GTGTTGGTGA TGGTTTGCAA
ACCAATAAAA TTTATTACCA TGTGAGTGAG TAA
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| Protein sequence | MLTRICGFSV FFAVLMGAAT SHADDTELYV FESSSRSGAR PQVMIIFDNS GSMRTVEPDA
TAFYDPNVIY PAVGSGNALQ ERMVYFTKGG IDNTAMPVPD SPSESRRFLS DINGCETSWN
YLNTYGVFTG FFREYSFSGQ NGTWQEVPDN NGANVTVIDC FDDIEAKKWK NAPGQPTGFP
VDSAGNKQNP IRYTPISASS TQAQIDAAII KAKQTGFGTG KALTLYTDNY LRWYHGDQAN
VPKSRLDIAK EVIKNTIVTT PSVDFGLTVF NINAFSEGDA DGGRIVSGIK TMTEANKLAL
LNTVAGLDPE TNTPLCETLY EVQQYFGGKT LTFGNKDKKP SGYSYTPNTP PRDTSIEQSG
KYISPFKECQ NLAYVVYITD GVPTLDQNAN NLVKALPNAD QTAYKNTNPN FSSYLPNLAQ
WMNNNDVNAN LVGEQKVKTF TIGFSDGAAD AAPLLIKTAE LGGGKYFAAK GAAQLQAALQ
QVFTDILEVN ASFTSPSIAS NNFDRTETFD SVYYAMFLPN RGPRWSGNLK KFKVTSGGKI
IDSKSVEAIG SDGNIKSSAC SFWTSSAICA SSSDGGDGND VTIGGTAEAL RQTANRKILS
NLSGGLVSLT KSAAATVAGG NANLATYIGV DETSLDAHFD WLKGADVDDD NANNNRTENR
RDIMGDPLHS KPLALNFGSE STPDIRVILG TNHGFLHMFK DAGTTVTESW AFMPYELLPN
IRPLKANVPS GVHSVYGMDS SPVAYVKRSA SGSIEKAWLF VGMRRGGKSY YAIDITNPDN
PSFMWKVDAN SAGMSELGQT WAKPVIAFIP GWPTGNADAG SAKPVLIVGA GYSPATKDGA
AVGTDDSNGR GAFVLDAETG ALVHAFGTSS GSNATKLPGI TDSVPNSVAL LDSNNDRLTD
RIYLTDTGAN VWRIDMPSAN PSDSTRPWTA FKFASLGGSS VATDRRFFAE ATVAKTVFTN
IAQVTTTDAQ GQSTTVISHQ NIPYDAVVIG SGNRPHPSDK GRTDMFFTLQ DRNVSSKSFN
GTTGNEIPVV LTKDDLYDVT SAPPVGEAQN LAFGAKRGWY YAFGSLGEKS LSAAAIIRGR
VFFTSYVPGD SSSSNQCLVA GVGRLYGFDL HKGTRSYTQT YFEMGERVPD TPQLVIPPGG
KKYMYLIGIG DAGDDMVKKD PDPEDDPEDC VENCVGDGLQ TNKIYYHVSE
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