| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2708 |
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| Symbol | |
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| ID | 4019227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3243546 |
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| End bp | 3246194 |
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| Gene Length | 2649 bp |
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| Protein Length | 882 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637956754 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_563710 |
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| Protein GI | 91794059 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0443118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACCAT CTACCTTTAA AAAAAATGTA CTCGCGACGA ATATCGCATT CTTACTGGGC
AGCGCCGTAT CCATGGGTGC CATTGCTGCT GAAAACCCAG TTGATGAAGC CAATATGGAA
AAAATTGAAG TCCGTGGTAT GCGGGCTTCA AATAAAGCAA ATATTAATGA AAAGCGATTT
TCTAATGCCG TGGTTGATGC AGTAACAGCA GAAGATATTG GGAAATTTCC TGATTCTGAC
GTAGGCCAAG CCCTTGGACG TGTGCCTGGT GTGAGCGTTG GTCGTGCATT TGGTCAAGGT
AGCTCGGTTT CTATCCGTGG TACAGATCCA TTAATGACAC TAACGACGTT AAATGGTCAA
AATGTGGCTT CAACTGGTTG GTATGATCAG ATGAATACAG ATCGTTCTTT CAACTATTCT
ATGCTGCCAT CTGAATTGGT TGGTGGAATG GAAGTTTATA AGTCAAGCCA AGCTAATCTC
GTTGAAGGTG GTATTGGCGG TACTGTTATT GTTAAAACAC GTAAACCTTT AGATATGGAG
GCTAATTCAA TATTTGGCTC TGTAAAAGGT GAGTACGGTT CTGTCAATGA AGATTGGGCA
CCTGAAACCT CTGGCTTATA TAGCTGGAAA AATGAATCCG AATCGTTTGG TATTTTAGTT
GCAGGCTCCT ATATTGATCG TGATTATCTT AGAACGGGTA CTGAAGCGGA TTTAGATTGG
GGTGGACGCT CTTCAATTCA GCCATCGAGT TTTCTTCAAG AACAAGAGCG TACCGCTGTT
GATGCCACGA TTCAATTTAG GCCAACAGAT AACCTTGAGT TTGGTGCGCA CATACTGTCA
ATGAAGTTAG GCGCTGATAG TATCGGCGCT AACATGTACA TAAATACCGA TACAAACTGG
GGGGCTGGTG ATTCCAATTG CCACAAGTTT AATGCCGCCG GAGTGTGTGT TGTCAGCGTA
ACCCCTGAAA GTGCTCCAAC CGATGTGTTT TTCCAGAATT GGGCTCGTCA AGGTGAAATG
ACTTCAGATA GCTTTGAGCT GAATGCCGAT TATCAAGGTG ATGGCTTTAA ATTATCGGCA
GTGGCGGGTA ATACTAAGGC AGAAGGGGGG ACTCAAATGA GTGCTAACTT CGGCTATGGT
TGGTGGGGTG ATAACTTTGG TCAGGTTAAG TGGGCCGGTA ATGTTGATGC CACAGGTAAA
CAGATTGATA TCAACGGCCG TGATATGAGC TTCACTCAAG ATCAGCTCGA TACTACCGTT
GGCACGTCTC AGTGGACGGG GGTACAAGGT CCTAATCGTG ATGAAGAAAA CTATGTCCAG
TTCGATGCTG ATTTTGATTT AGACATGGGG ATCTTAACTA AGTTTGAAAC GGGTATTCGC
TATACTCAAC ATGAGTTTGA GAAGTCAGAA AATAAAGCTG TTTATGACCC CACTAAAACT
AACTCGTTTA ATACCTCAGA TCTTTATAGC GGCACAATGA AGTTAGGTTA TGACGGTTGG
AATGTGCCAA AACCCAATCT AAATGCCATG ATTGATAGCA CAATTTCATT GGTTGATGAG
TTTGTTTATA ATCGAGCTGC CTACGGTTTA ATCGAAGAAG ATAACTTATC TCTTTATGGT
ATGTTTAGTT TCGATGGTGA AGACTTTCGT GGTAACTTCG GCGTGAGATA TATCAACACA
GATGTCACAT CAAGTGGCCA TGTTATTGAT AATTCTCCAG CCGATAAATT AGCGGTTAAT
TCTGGTTGGA GTGAAGAGAT ACACAGTGTT AGTGATGATT ATAGCGATAT TTTACCAAGC
TTTAATATTT CTTATAACGT CACTCAAGAC GTCATTGCGC GTTTTGCAGC AGCCCAAGCC
ATTACCAGAC CTAATTACGA CAACCTGTTT TTATCTAGCG TGTCAGGCTA CCCAGATGAC
CGTAAAGGCA ATGAAGAGAT CACTTACGGT AATCCAGGCT TAAAGCCAAT GAAATCTTCA
CAATTTGATA TTAGTCTTGA ATACTATTAC GGTGACGGTA ATTTAGTCTC AGCAACTTAC
TTCACTAAAG ATATCAGTAA CTTTATTGTT GCAACAACGG ATTACAATCA AAGCATTGGC
GTTATCAACA ATGACTTAGA TACACCGGCA GACGATTGGA CGGTTAATAA TTTCGTCAAT
GCTAATGATG GCAAAATTGA TGGTATTGAG CTTCAGCTGC TTCATGCATG GGATAATGGC
TTCGGTGTTA ATGCTAACTA TACGTTTGCA AATGGCACTG CGCCTGCCGA AGTATACACA
GATAGCATAG GTGTCTTTAC TGAGTCATCC GAGCATACCG CTAACTTAGT GGGTTATTGG
GAAAATGATG ATTTCTCTGC TCGCGCCGCT TACAACTGGC GTTCTGAGTA CATGGTCCGT
GAATATGGTA AGTATTATGG AAACCGTATG CATGATGCCT TTGGTACCTT AGACGTCACC
TTGGGCTGGA ATATTACTGA AAATATCGGT CTACAGCTCG AAATTGTTAA CTTAACAGAA
GAGGATGATG TCCAATACGG TGCAGCATCA GCAGGTACTA AAGTTAAACC TGCGCTTCAG
GATGATTTTC CAACGTGGTC TTTCAAAGGC GAAACAACTT ATAAGTTAGG TGCAAGTTTC
CGCTTTTAA
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| Protein sequence | MRPSTFKKNV LATNIAFLLG SAVSMGAIAA ENPVDEANME KIEVRGMRAS NKANINEKRF
SNAVVDAVTA EDIGKFPDSD VGQALGRVPG VSVGRAFGQG SSVSIRGTDP LMTLTTLNGQ
NVASTGWYDQ MNTDRSFNYS MLPSELVGGM EVYKSSQANL VEGGIGGTVI VKTRKPLDME
ANSIFGSVKG EYGSVNEDWA PETSGLYSWK NESESFGILV AGSYIDRDYL RTGTEADLDW
GGRSSIQPSS FLQEQERTAV DATIQFRPTD NLEFGAHILS MKLGADSIGA NMYINTDTNW
GAGDSNCHKF NAAGVCVVSV TPESAPTDVF FQNWARQGEM TSDSFELNAD YQGDGFKLSA
VAGNTKAEGG TQMSANFGYG WWGDNFGQVK WAGNVDATGK QIDINGRDMS FTQDQLDTTV
GTSQWTGVQG PNRDEENYVQ FDADFDLDMG ILTKFETGIR YTQHEFEKSE NKAVYDPTKT
NSFNTSDLYS GTMKLGYDGW NVPKPNLNAM IDSTISLVDE FVYNRAAYGL IEEDNLSLYG
MFSFDGEDFR GNFGVRYINT DVTSSGHVID NSPADKLAVN SGWSEEIHSV SDDYSDILPS
FNISYNVTQD VIARFAAAQA ITRPNYDNLF LSSVSGYPDD RKGNEEITYG NPGLKPMKSS
QFDISLEYYY GDGNLVSATY FTKDISNFIV ATTDYNQSIG VINNDLDTPA DDWTVNNFVN
ANDGKIDGIE LQLLHAWDNG FGVNANYTFA NGTAPAEVYT DSIGVFTESS EHTANLVGYW
ENDDFSARAA YNWRSEYMVR EYGKYYGNRM HDAFGTLDVT LGWNITENIG LQLEIVNLTE
EDDVQYGAAS AGTKVKPALQ DDFPTWSFKG ETTYKLGASF RF
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