| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2681 |
|---|
| Symbol | |
|---|
| ID | 4019198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3212747 |
|---|
| End bp | 3213796 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956725 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_563683 |
|---|
| Protein GI | 91794032 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.172502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATCA CGATGGAAAT TACTGAATTA TTAGCCTTTA GCGTAAAACA TAAGGCATCA
GATCTTCACT TATCAGCAGG TGTATCGCCT ATGATCCGAG TCGATGGCGA AGTCAGAAAA
ATAAATCTGC CGGCGCTGGA TCATCAAGGC GTTCACAGCC TAGTGTACGA TATAATGAAT
GATAAACAAC GCAAAGACTA TGAAGAGCAC CTAGAAATCG ATTTTTCCTT CGAAGTGCCT
AATTTAGCTC GCTTTCGTGT TAATGCCTTT AATCAGTCTC GTGGCGCGGG CGCAGTATTT
CGTACGATCC CCAGTGATAT TTTATCCCTT GAGCAGTTAG GTGCTCCTGA AATTTTTAAG
AAAATCGCAA GCTTCCCAAG GGGGCTGGTG TTGGTGACTG GGCCCACTGG CTCGGGTAAA
TCAACCACCT TGGCAGCCAT GGTGGATTAT GTGAATGAAA ATCGTCACGA TCACATCTTA
ACCATCGAAG ACCCCATAGA ATTTGTGCAT CAAAACAAGC AATGTTTGAT TAACCAGCGT
GAAGTGCATA AACACACCCA CAGCTTTAAT GCGGCGTTAC GTTCGGCGCT GCGTGAAGAT
CCTGATGTTA TTCTCGTGGG TGAAATGCGA GATCTTGAGA CCATACGCCT TGCCATGACG
GCGGCGGAAA CTGGTCATTT AGTGTTTGGC ACCTTGCATA CTACGTCAGC TGCCAAGACC
ATTGACCGTG TGGTCGACGT ATTCCCCGCG GGTGAAAAAG ACATGGTGCG CACCATGTTG
TCAGAATCCT TACAGGCGGT TATCTCGCAG ACCTTGATCA AGAAAATTGG CGGCGGCCGG
GTTGCCGCCC ATGAAATCAT GATGGGCACC CCGGCTATTC GTAACCTCAT TCGTGAAGAT
AAAGTGGCAC AAATGTACTC AGCGATTCAA ACGGGTATGT CTCACGGGAT GCAAACCTTG
GAGCAGAGCC TGCAAGTGTT AGTGAATCGT GGTCTTATTA CTCGTGAAGA TGCCATGTCT
AAGAGCTCAA ATAAACAAGC TAATTTTTAA
|
|---|
| Protein sequence | MSITMEITEL LAFSVKHKAS DLHLSAGVSP MIRVDGEVRK INLPALDHQG VHSLVYDIMN
DKQRKDYEEH LEIDFSFEVP NLARFRVNAF NQSRGAGAVF RTIPSDILSL EQLGAPEIFK
KIASFPRGLV LVTGPTGSGK STTLAAMVDY VNENRHDHIL TIEDPIEFVH QNKQCLINQR
EVHKHTHSFN AALRSALRED PDVILVGEMR DLETIRLAMT AAETGHLVFG TLHTTSAAKT
IDRVVDVFPA GEKDMVRTML SESLQAVISQ TLIKKIGGGR VAAHEIMMGT PAIRNLIRED
KVAQMYSAIQ TGMSHGMQTL EQSLQVLVNR GLITREDAMS KSSNKQANF
|
|---|
| |