| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2610 |
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| Symbol | |
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| ID | 4019127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3125198 |
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| End bp | 3128170 |
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| Gene Length | 2973 bp |
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| Protein Length | 990 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637956654 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_563612 |
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| Protein GI | 91793961 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.108491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACAA GATTATTTAC CAAAACCAAG CTTGCCACTA GCCTATCGCT GGTGCTTGGA
GTGAGCAGCG TCTTACCTGT TCATGCCGCA GATAAGGCCA GTGAAGATAA AATTGAAGTG
TTCCAAGTCA CAGGTATTCG TGGCAGTTTA GTTAAATCTA TGGATATCAA GCGCAGCTCC
AATGGCATTG TCGATGCCAT TACATCCGAA GACATAGGTA AATTCCCTGA TGGCAACTTA
GCAGAGTCAT TGCAACGCAT CTCTGGCGTG TCAATCGATA GAAGTAATGG TGAAGGCGCT
AAAATCACAG TTCGAGGCAT GGGGCCTGAA TTCAATATGG TGACCCTAAA TGGTCGTCAG
ATGCCAACCG TAGGTGGACG CGCTTTTGAT TTTAGCAACA TAGCCACAGA TGCTGTTAGC
ACGGTAGAAG TGTATAAAAC CGCTAAGGCC GAATTACCCA CGGGCGGTAT TGGTGCTACG
GTAAACATGA TCACTGCACG CCCCTTCCAA AACCCGGGTT TGCAAGCCGT TGTGAGTGGT
AAAGCCGTTC ACGAAACCTC GGTTGAAGAC AGGGGAAGTG AGCTAACACC TGAGTTATCA
GGTTTATTTA GCAATACCTT TGCCGATGAC AGCTTTGGTT TTCTTATTTC AGGCTCTTTC
CAAGACCGTG ACAACAGAGA AGAAACCGCA GGTGTCGATA ACTGGATCCC GAACGTGGGT
ACAGGCACTG GCATAATTAC TAATAACAAC CAAAGAGCCG ATGGTGCCAA CTGGTATCCT
CAAAACTCTG GATACACGAT TAAAGACAAC AGCCGTCAGC GTACCAATGG CCAGATTGTA
TTCCAATATA CCCCCACAGA CACACTCACC TCGACACTGG ATTATACCTA TTCAAAAGTG
GAAACCCGAG GTGATTTTGA CTCCTTCGGT GTCTGGTTTA ACAATGGCGG CTCTATTGTT
AATGGCACTA TCAATGAGCG AGGCACCTAT ACCCAAGTCG CCGAATCCGG TGGTGATTTT
GCCACCAACG TAGGTCGAGG TGAAAGTGAA AAAGAAAACA AATCACTGGG CTTAAACATT
GAGTGGCAAG CGACTGAAAA TTTTGAGTTT ACCTTCGATG CACACACATC TTCAGCCCTA
GATAGAGGGG TGGGCCTAGG TAATGATGCC TTCTTAATTA TTGGTAATAC CTTCTGTAAT
TGGTGTGGCA GCACCCCAGG TGCGGGTCCA AGCACTGCGG CTATCGACGT CAAGAGTGCC
ACTTTCCCGG CAAGTGGTAT TCCAATTTAT GACATGACCT TTGTCGACGG TAATGGCAAT
CCTCAGGCAG GACTAACAGC CGCCGACATA GGTTCATTAT TTGGCGGTGC AACTCAAGAT
AGCAGCGAAA ATGACATGGA CCAATTCCAG CTAAAAGGGA AATGGCTCAA TAGCGGTAAC
GGCTCCCTGG TCAGCATCGA CTTTGGTGTC GCCAGAACCG AGCAATCATT TAAAAACACC
AAAGCTTATT CAGGTTTATT ACCTGCAGGC TGGTGGAACT GGTCGGCGCA ATATTGGCCA
GATGAGTTAT GGTCACAGGG CAGCACCAAT GGCTTATTAA ACGCCTTTGG CAACAGCGGT
AATATCACTC AAGGTTCATA CTACAGAGCC GATTTCGACA CTATCTTGCA CGGTTATGAA
ACCATCACTG ATACCTTTGC TTCTTGCTGC TTCAATGAAT CTTGGCCCGA TGAGTTCAAA
AATGCCGATG GTACAGGTAA GTTTTGGGCA GGCAGTAATG ATTCAGATGC GCGAGTTAAT
GAAGTGGTCA CTTCGGCTTT CACGCAATTA ACATTCGAAG ATGAATTCAA TGGCATGCCG
ATAAACCTAG TGACAGGTCT TAGGTACGAA GAAGCTAAAA TATCATCTCA AGGACTTGAG
ACCCCTGCAA CTAACGTGAT TTGGTCAGGT GGTAACGAGT TTGTTTACGA ATTCGGCGAA
GCTGCATTCT CTGACGGTGA AGCGACCACT AAGCAATTTC TACCTAGCTT AGACATAAGC
TTAACTGTCA CGGACGATCT TATTACTCGT TTCTCCTTTG CTCGCTCTTT GACTAGACCT
AACATAGGTG ATTTACGCTC AACCACCGAT TTTGCCGGTT CTCCCAAAGT CGGTCAGCGA
AAAATTGTTT CCGGCAACCC TGGCTTAAGC CCCTATATTG CAGATAACTT CGATTTATCG
GCCGAGTACT ATTACGCAGA AGGCAGTTAC GTTTCAGTAG GTTACTTCAA GAAAATTGTT
GATAACTTCC TTGTTAAATC AAGCTCTAAA GTGGAAATTG ATGGCATAAG AGACGTATAC
GCAGGCCCTA GGGCTGAAGA AGCCCGTGCT CAACTCGTCG CTGAGGGGCT GCAAGCCACA
GATCCTAATG TGTTTGCACG CATTAACGAG AATATGGGCA TTACTGATCT AACTACCCCA
ATACGTCCTA ATGACGACGA CCCTTTGGCC GTGTTTGATA GAACTGGGGT GACCAATGGT
GAGACGGCTA ACCTGTTCGG CTGGGAAATT GCAGCCCAGC ATTTATTCGG TGACTCAGGT
TTTGGCGCTA TGGTGAATGC CACCTTCGTT AATGGTGACG TGGAAGCTGA CCCAGATGCC
ATCGAACAAG AGTTTGCCCT ACCCGGCATG AGCGATTCGG CTAACGTTTC AATGTTTTAT
CAAAATGAAC AGTGGTCGGC ACGGGTATCT TACAATTGGC GCGATCAGTT CTTCAGCGGT
TTAGATCAAC ACGGTTCACC GGTTTATACT GAGGCTTACT CTCAAGTGGA TGCAAACGTA
AGTTACGCCA TCACAGAAAA CTTCACGGTA TTTGCCGAAG CGCTTAACCT AACCGAAGAA
ACCCAGCGCT CTTTTGTGCG TTATGAAGAG CAACTGCTTA GGGCAAATCA GTATGGTGCT
CGATATAACT TAGGCATGAG ATACAAGTTT TAA
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| Protein sequence | MKTRLFTKTK LATSLSLVLG VSSVLPVHAA DKASEDKIEV FQVTGIRGSL VKSMDIKRSS
NGIVDAITSE DIGKFPDGNL AESLQRISGV SIDRSNGEGA KITVRGMGPE FNMVTLNGRQ
MPTVGGRAFD FSNIATDAVS TVEVYKTAKA ELPTGGIGAT VNMITARPFQ NPGLQAVVSG
KAVHETSVED RGSELTPELS GLFSNTFADD SFGFLISGSF QDRDNREETA GVDNWIPNVG
TGTGIITNNN QRADGANWYP QNSGYTIKDN SRQRTNGQIV FQYTPTDTLT STLDYTYSKV
ETRGDFDSFG VWFNNGGSIV NGTINERGTY TQVAESGGDF ATNVGRGESE KENKSLGLNI
EWQATENFEF TFDAHTSSAL DRGVGLGNDA FLIIGNTFCN WCGSTPGAGP STAAIDVKSA
TFPASGIPIY DMTFVDGNGN PQAGLTAADI GSLFGGATQD SSENDMDQFQ LKGKWLNSGN
GSLVSIDFGV ARTEQSFKNT KAYSGLLPAG WWNWSAQYWP DELWSQGSTN GLLNAFGNSG
NITQGSYYRA DFDTILHGYE TITDTFASCC FNESWPDEFK NADGTGKFWA GSNDSDARVN
EVVTSAFTQL TFEDEFNGMP INLVTGLRYE EAKISSQGLE TPATNVIWSG GNEFVYEFGE
AAFSDGEATT KQFLPSLDIS LTVTDDLITR FSFARSLTRP NIGDLRSTTD FAGSPKVGQR
KIVSGNPGLS PYIADNFDLS AEYYYAEGSY VSVGYFKKIV DNFLVKSSSK VEIDGIRDVY
AGPRAEEARA QLVAEGLQAT DPNVFARINE NMGITDLTTP IRPNDDDPLA VFDRTGVTNG
ETANLFGWEI AAQHLFGDSG FGAMVNATFV NGDVEADPDA IEQEFALPGM SDSANVSMFY
QNEQWSARVS YNWRDQFFSG LDQHGSPVYT EAYSQVDANV SYAITENFTV FAEALNLTEE
TQRSFVRYEE QLLRANQYGA RYNLGMRYKF
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