| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2589 |
|---|
| Symbol | |
|---|
| ID | 4019106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3099952 |
|---|
| End bp | 3100596 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637956633 |
|---|
| Product | outer membrane protein W |
|---|
| Protein accession | YP_563591 |
|---|
| Protein GI | 91793940 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3047] Outer membrane protein W |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000746821 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATA ACATCACCCT AGCTTTACTT GCAGCAGGTC TTATTACTGC AAGTTTTACT
AATGTTGCTC AAGCTCATCA AGCAGGCGAC ATTATCGTCC GTGCTGGTAT AGCAACCGTC
GCGCCCAATG AATCTAGCCC TGTGGTTGCC GCCGTGGATG AATTCACTGT GGATACTAAC
ACTCAACTAG GGCTTAACTT TGCCTATATG CTGACAGACA GTATAGGAGT CGAATTACTC
GCCGCCTCGC CGTTTAGCCA TGACATTTCC CTAGGATCCT TAGGTCAGAT TGCCGAGACT
AAGCATTTAC CGCCAACACT AGTGGCCCAG TATTATTTTG GACAAGCCAG CAGCGTAGTG
CGTCCTTATA TAGGCCTAGG GCTTAACTAC ACCAATTTCT ATGATAACGA ATTCACCAAT
GACTTAAATG GTGCACTCAC CAATTTAAGC ATGACCTCAT CTTGGGGCGT AGCCGCGCAG
GTTGGCCTAG ATTATAAGCT GAATAAAGAC TGGTTAGTGA ATGCCTCAGT GTGGTACGCC
AAAATCCAAA CCGATGTCAG CTTTGATATG GGCGGCATAG CGCAAAAGGT TGAAACAGAC
ATAGATCCTT GGGTTTACAT GGTGAGTGTG GGTTACAGCT TTTAA
|
|---|
| Protein sequence | MNNNITLALL AAGLITASFT NVAQAHQAGD IIVRAGIATV APNESSPVVA AVDEFTVDTN
TQLGLNFAYM LTDSIGVELL AASPFSHDIS LGSLGQIAET KHLPPTLVAQ YYFGQASSVV
RPYIGLGLNY TNFYDNEFTN DLNGALTNLS MTSSWGVAAQ VGLDYKLNKD WLVNASVWYA
KIQTDVSFDM GGIAQKVETD IDPWVYMVSV GYSF
|
|---|
| |