| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2577 |
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| Symbol | |
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| ID | 4019094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3083341 |
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| End bp | 3086484 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637956621 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_563579 |
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| Protein GI | 91793928 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTATTCG CTATGGATAA AGCATTTCTG TTCTTTTTTC TTGGGCAAGT GGCAATCGTG
ATGATGCTGG CTTATTTTCT TTGCCTCATT CCTAGAAATG ATCAGCAAAA ACATGCGCCT
AGCTATCAAA TTGTTATAGG CGTATTGGCA GCCTTTGGAG TTATGCTGTT AATTGAGCAC
GGGATCATGT ATGGATTAGG ACTGCCTTCC AATGAGAGTG TGTTTCAGGA TTTGAATCAG
ACATACTCAA GTGATAGCGA ACTCACGGGA TTATTTTTTG CCTCTAGTGC CTTGATAGCG
AGTTTGGTAG GGCTTTATTT TGGCCGGTAT GTGCTGCTGG TCGCGGCCCT AGTACTCAGC
CCTTATGTTA TTTACTTAAC GGACTTTCCG ATTATTAGCT TAATACTTGC TCTGGGCTTG
AGTGGCGTTC TTGGGGCACT TTTTCGGCGT TATACTGTAG AGCACTTAGG CACAATCAAA
CTTGCAAAGC TCTACTTGTT TGGTCTGGTT GTGCAAATCG TCTTTTTATC CACTAGCATG
CTAACGGCAG ATAACTGGCG CCATGTCATC CATTTGAATT CACTTTATTT ATTAGTATTT
TTTCCTTTGA TTATGTTAGC AGCGGCTAAT TTAATGTCTA AGTACATCTT CTTTGAACGT
AATATGCAAA TACGGCTTCA GGAAGATTTT CTCTTCAAAA ATCAGTTTGA TATTGGAAAT
ATTGGCATAG CCATTACTTC GAAAGCTAAG TACTGGCTTA AGGTTAACCC TTGTATTTGT
AAGATGCTTA AATACTCAGA AAAAGAGTTA ACGAGAATGA CATGGAAGGA GTTAACTCAC
CCTGAAGATC TGGAAAAAGA TTTAAGCTAT TTCAACAGAA TGTTAAAAGG GGAAATCAGT
GAATACGAGA TTGATAAACG TTTTATCGCA AAAGATGGCG CCATAGTTTA TACCCATTTG
ACCGTCGCTT GTCGGTTTTA TGATAACGGT TCCATGCTAG TGATTGCAGG TTTCCTGGAT
ATTACCAAGC TTAAACAAGC AGAAGCCGCA TTGCAAAACT CCAAGGAGCA ATTGGCATTG
GTGCTCGACA GTAGCGATCT TGGTATTTGG GATTGGCATA TTAATACCAA TGAGGTGGCC
AGCAATTTAC GTAGCGCTCA AATCATAGGT TGTGAATTAG CATTATTAAA CCAAAAACCC
TCCCTATGGT TTAAAGCCAT TATTGCAGAG GACAGAAAAC GGCTTATCAA GTCATTATTG
GCAATACGTA AAGGTCAGAG TATTCATCAT AAAATTGAAT ATCGCATTCG CAGTTTAAAC
GGTGACATCA GATGGATATT AGACACAGGA AAAGTGGTGG AGGTGGCAGA TACCGGTCAG
CCATTGAGGA TGTGCGGTAC CCATACCGAT ATCACAGATT TAAAACGAGC GGAGGAGTCT
TTAAGTATCG CGGCTTCGGT TTACCGTAAC TCCAGTGAAG CCATGTGTGT GTTCGATTAC
CAAGGCAAGA TAGTTAATAC TAATCCAGCC TTTAGTGAAA TCACGGGGTT TGATGCCGAT
GAAGTCATAG GTCAGCATTT AGCTGTGTTA CAAAAAGAGG AGCAAGCTGA GCATTTTAAC
TTACAGCTAG AACAGTACTT GTTTGAAAAA CGCTATTGGC AGGGAGAACT TTCATTTCAA
AGAAAGAATG GCCAAACCTA TACGGCGTGG GTAACCATTA ACGCCATCGG TGAACTAGAC
ACTTGTGACA CCTTGAATGT GATGTTATTT GCAGATGTAT CAGAAAAGAA GCAAGCCGAA
GAGCTTATTT GGTTGCAAGC CAATTACGAT ACCTTGACTG GCCTGCCTAA TCGACGCATG
TTACTCGAGT ATATTAAATT ACAAATCGCG AATTGTACTC GTGATAATCA AGGTTTTGCC
TTGTTGTTTC TGGATTTAGA TTTCTTTAAG GAAGTGAATG ATTCCTTGGG TCATGACATG
GGGGATTCAC TTTTGGTGGA AGCTTCCCAG CGAATTAAGG CCTGTATTCG AGACGCCGAT
CTTGTGGCTC GTATTGGCGG GGATGAGTTT ACCATAGTGC TAACCGATTT TACCGGGCCA
AAAGGCGTTG AACGTGTCAC CAATAAGATA TTAAAGCAAC TGTCGGAGCC TTTTATGTTA
GGCAGTGAAA TGGCCTATAT CAGTGGCAGT ATAGGTATTA CCTTATATCC CGATGACGCT
CTCACCATAG ATGGCTTGCT TAAGAATGCC GATCAGGCCA TGTATTCGGC CAAGGCTCAT
GGACGTAACA AGTTCAATTA CTTTACCCCC AAGATGCAAG AGACCGCTTT GAGGCGGATG
AAGTTAATTC AAGATCTTAA AACGGCGATC AAGATGGAAG AGTTTGAACT TTATTATCAG
CCCATTATTG ATTTTTCCGC TAACGCTAGC GACAACATTA CTAAAGCCGA GGCCTTGATC
CGCTGGCATC ATCCCAAATT AGGCTTTATC TCGCCGGTTG ATTTTATTCC CATTGCCGAA
GATACCGGCA TGATAGTGGA AATAGGTAAT TGGGTGTTTA GACAGGCTTG TCGGCAAGCG
GCTCAGTGGA AGCAAACCTA TGGGCTGGAC ATACAGATAA GCATTAATAA ATCGCCAGTA
CAATTTAGGG ATGAGCGTTC AAGTGTAACG AGCTGGACTC AATATATGTC TGAGTTAAAT
TTGAGCCCTG CAAGCATTTG TGTGGAAATT ACCGAAGGTC TGCTATTGGA GACGGAATCA
GGTGTCGGGG CTAAATTAGC CGCATTTCGT GATGCTGGTA TGCAAATTTC TTTGGATGAT
TTTGGTACAG GTTACTCTTC ACTGTCTTAC CTAAAGAAAT TTGATATAGA TTACTTGAAA
ATTGATAAGA GCTTCGTCAG TAACCTTGAA GATAATACTA ACGACTTAAG TTTGTGCGAG
GCAATTATCG TCATGTCACA CAAACTCGGC ATAAAAGTCA TCGCCGAAGG GATTGAAACT
GAACTACAAA GGGCCATGCT CGAGTGTGCG GGCTGTGACT ATGGACAAGG CTATTTATTC
TCAAAGCCTG TAAAAGCAGA AGATTTTGAG TCGCGGTACT TTATAAGCTC AGATGAGTTT
AGGGTAAAAA AGAATAGGGC CTAA
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| Protein sequence | MLFAMDKAFL FFFLGQVAIV MMLAYFLCLI PRNDQQKHAP SYQIVIGVLA AFGVMLLIEH
GIMYGLGLPS NESVFQDLNQ TYSSDSELTG LFFASSALIA SLVGLYFGRY VLLVAALVLS
PYVIYLTDFP IISLILALGL SGVLGALFRR YTVEHLGTIK LAKLYLFGLV VQIVFLSTSM
LTADNWRHVI HLNSLYLLVF FPLIMLAAAN LMSKYIFFER NMQIRLQEDF LFKNQFDIGN
IGIAITSKAK YWLKVNPCIC KMLKYSEKEL TRMTWKELTH PEDLEKDLSY FNRMLKGEIS
EYEIDKRFIA KDGAIVYTHL TVACRFYDNG SMLVIAGFLD ITKLKQAEAA LQNSKEQLAL
VLDSSDLGIW DWHINTNEVA SNLRSAQIIG CELALLNQKP SLWFKAIIAE DRKRLIKSLL
AIRKGQSIHH KIEYRIRSLN GDIRWILDTG KVVEVADTGQ PLRMCGTHTD ITDLKRAEES
LSIAASVYRN SSEAMCVFDY QGKIVNTNPA FSEITGFDAD EVIGQHLAVL QKEEQAEHFN
LQLEQYLFEK RYWQGELSFQ RKNGQTYTAW VTINAIGELD TCDTLNVMLF ADVSEKKQAE
ELIWLQANYD TLTGLPNRRM LLEYIKLQIA NCTRDNQGFA LLFLDLDFFK EVNDSLGHDM
GDSLLVEASQ RIKACIRDAD LVARIGGDEF TIVLTDFTGP KGVERVTNKI LKQLSEPFML
GSEMAYISGS IGITLYPDDA LTIDGLLKNA DQAMYSAKAH GRNKFNYFTP KMQETALRRM
KLIQDLKTAI KMEEFELYYQ PIIDFSANAS DNITKAEALI RWHHPKLGFI SPVDFIPIAE
DTGMIVEIGN WVFRQACRQA AQWKQTYGLD IQISINKSPV QFRDERSSVT SWTQYMSELN
LSPASICVEI TEGLLLETES GVGAKLAAFR DAGMQISLDD FGTGYSSLSY LKKFDIDYLK
IDKSFVSNLE DNTNDLSLCE AIIVMSHKLG IKVIAEGIET ELQRAMLECA GCDYGQGYLF
SKPVKAEDFE SRYFISSDEF RVKKNRA
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