| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2556 |
|---|
| Symbol | |
|---|
| ID | 4019073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3058295 |
|---|
| End bp | 3059851 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637956600 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_563558 |
|---|
| Protein GI | 91793907 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGATC TAAGTACGCC AATATCGCAA ATTGCCCTGT TGAAGCAAAA GCTTCTTTCC
ACTAAATCTG CATTAGCTGA AATCACGGAC GATAGAAACA GCAAACTCAA AACCTTAGTA
CAATTTATCA ATCACTTAAG CCTTGCTTGT AAAGGTCAGC ACTTAGAGCT GGACAATAAA
CTCGCCAAGC TGCGCCATAA CTTGAATAAT TTCGAGCAGA TTGATGATGC CTTGCCTGAA
CTGATGGACA TTGAGCGATT ATTAAAGAAC AGCTACAACC ACACTAAACT CAAACTCGAA
GATAGCCGTC AAGGCCTAAT TAGAGTCATC AGACAAATTC AGCGTGTCAA CTCTGCGCCA
GACAAACTCA AAAAAGAGAT TGGTTACGCC AAACAAGATT TAGACAAACC TTTTCACACC
ATTTGGGATT ATATTCCAAA AGTTGAGCAG CTTATTGGGT TTTACGAGTC TATTTTAGCC
CAAGATTTAA AAGGCGCCGA TAATTACCAA ATTTTGCCGC AGCACATTCA GTTAGCAAAA
GAGTTGGCAC AAAAAATTTC CGAGATTGAA TTTAGGAAAG AGCAAAGAGA TCAAGTCTTA
GTCCTCAAGG AAGTGCTGCT CAGTGACATA AGCCTTAGCA GCTTACTTGA GTCTTACCAA
ACGGTGTTAT GCCTGTTACT GGATAATATC GCCAGAGAAA AAACCGCCTC TGAAGATTTT
TTATATGCCC TCAACGATGC ACTGTCTATC GTAAGGGATG TGGTAAACAA CAGCCATAAT
CACAATCAAC GCAGTCAACA AATAAAAGCT CAGCTTAATC AGGAAATCAA CCTTAGGGTC
GACAATGCCG ACGGTATTCT GATTGAAACC TCAGATCTCA CCGAGCTTAA AACTCAGTTA
ACCATACAGC TCAGTTCACT GCGGGATGCG TTAACCCGAA AAGAATCTTT AGAGGAACGC
GAACAGGCGG TATTGCGTAA ATCCATCGAG GCCATGCGCA AAGAATTGGC TAATATCACT
AATGAAGCCA ACAGCTATAA AGAACAACTT TTTGAACATC AGAAGCTTAA CTTGCTCGAC
CCCTTGACTC AGCTGGCCAA CCGCGCCGCA CTCGAAGACA AAATGGAGCA AGAATACCGC
CATCATAAAC GCTTTAATAC CCCATTGTGG ATTGCGGTTA TTGACATAGA TCATTTTAAA
TCAATCAATG ATAACTTCGG CCACAGCACT GGGGATAAAA CCTTACAAGT CATCGCCATG
GCACTGAAAA ACTCCCTACG TGAGAGTGAG TTTGTTGCCC GCTACGGCGG TGAAGAATTT
GTGCTCTTGT TACCCGATGT CACTGAACTG CACATATCTC AATTATTGAA CCGAGTACGG
GAGAAAATAA AAAATATTCC GTTTAAGTTT AAAAATCAGA GAATTACAGT TACATTGTCT
ATAGGGGCTG CGCAAGTGCT AGAAAATGAA CTCTGCACTG AGACGTTCGA GCGTGCCGAT
GCTGCCCTTT ACAAGGCCAA AAACAATGGT CGAGACAGAG TTGTGATAGA GGTCTAG
|
|---|
| Protein sequence | MQDLSTPISQ IALLKQKLLS TKSALAEITD DRNSKLKTLV QFINHLSLAC KGQHLELDNK
LAKLRHNLNN FEQIDDALPE LMDIERLLKN SYNHTKLKLE DSRQGLIRVI RQIQRVNSAP
DKLKKEIGYA KQDLDKPFHT IWDYIPKVEQ LIGFYESILA QDLKGADNYQ ILPQHIQLAK
ELAQKISEIE FRKEQRDQVL VLKEVLLSDI SLSSLLESYQ TVLCLLLDNI AREKTASEDF
LYALNDALSI VRDVVNNSHN HNQRSQQIKA QLNQEINLRV DNADGILIET SDLTELKTQL
TIQLSSLRDA LTRKESLEER EQAVLRKSIE AMRKELANIT NEANSYKEQL FEHQKLNLLD
PLTQLANRAA LEDKMEQEYR HHKRFNTPLW IAVIDIDHFK SINDNFGHST GDKTLQVIAM
ALKNSLRESE FVARYGGEEF VLLLPDVTEL HISQLLNRVR EKIKNIPFKF KNQRITVTLS
IGAAQVLENE LCTETFERAD AALYKAKNNG RDRVVIEV
|
|---|
| |