Gene Sden_2548 details

Gene Information

• Locus tag: Sden_2548
• ID: 4019065
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 3047818
• End bp: 3048393
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637956592
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_563550
• Protein GI: 91793899
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 59
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTGCC AACCCACCAC CATCCCGGAG GTATTACTCT TTAAGCCCAC ACTCCATGGT 
GATGAGCGCG GCTTTTTTAT GGAAACATTC AGGCAAAAAG AATTTGATGC TTGCCTCATG 
GCCAATGGCA TGGCGGCAAC CCCGTTAGTG CAAGACAATG TTTCACGTTC TCATCGCCAT 
GTACTCAGGG GGTTACACTT CCAAGAGCAT CATCCCCAAG GTAAGTTAGT GCGGGTTTCC 
CAAGGTGAAA TATTTGATGT GGCTGTCGAT ATTCGGCCAC AATCGGCAAC CTTTGGCCAC 
TGGGTAGGCC ATATCCTTTC AGCAGAAAAC CGGTTACAAA TGTGGATCCC CACAGGTTTT 
GCCCACGGTT TTTATGTGCT CTCAGATATC GCCGATATCG TCTATAAATG CAGTGATTAT 
TATCAGAGCC ATGATGAGCG AGTCATCCCT TGGAATGATC CTCAACTAGC CATAGATTGG 
CCCCTTGAAG CTGAGCCCAT TTTATCAATA AAAGACAATC CACAGTTTTT CTGTCAAGCC 
TCAAACCCTC TGGTTATGAT GCAGAAAATA AAATGA 

 

Protein sequence

MNCQPTTIPE VLLFKPTLHG DERGFFMETF RQKEFDACLM ANGMAATPLV QDNVSRSHRH 
VLRGLHFQEH HPQGKLVRVS QGEIFDVAVD IRPQSATFGH WVGHILSAEN RLQMWIPTGF 
AHGFYVLSDI ADIVYKCSDY YQSHDERVIP WNDPQLAIDW PLEAEPILSI KDNPQFFCQA 
SNPLVMMQKI K