| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2544 |
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| Symbol | |
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| ID | 4019061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3041469 |
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| End bp | 3043184 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637956588 |
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| Product | prolyl-tRNA synthetase |
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| Protein accession | YP_563546 |
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| Protein GI | 91793895 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.54671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAGTTA GCAAGTACCT GCTTTCAACA CAAAAAGAAA CACCTGCAAA TGCAGAGGTG
ATAAGTCATC AGTTAATGCT GCGTGCGGGT ATGATCCGCC GTAATGCTTC GGGTCTTTAC
AGCTGGTTGC CGTCTGGTTT ACGTGTTTTA CGTAAAGTTG AAGCTATCGT GCGTGAAGAA
ATGAACAAGG CTGGCGCCAT CGAAATTCTG ATGCCCCTAG TTCAACCTGC TGACTTATGG
ATTGAAACGG GTCGCTGGGA AAAGTTTGGT CCTGAACTGC TGCGCTTCCA AGACAGACAC
AATCGTGATT TTGTCCTTGG CCCGACCCAT GAAGAAGTGA TCACAGATCT TGTGCGTAAA
GAAGTCAGCT CATATAAGCA GCTGCCTTTA AGCCTGTATC AAATCCAAAC CAAGTTTCGC
GATGAAGTGC GCCCACGTTT TGGCGTAATG CGTGCCCGTG AATTCTTAAT GAAAGATGCC
TACTCGTTCC ATTTAGATCA AGGCACCATG GATGAAACTT ATCAGGCAAT GTTCACGGCC
TATAACAATA TTTTCACTCG TATGGGACTT GCATTCCGCC CTGTACTTGC TGACACAGGT
TCAATTGGTG GCAGTCTTTC CCACGAATTC CACGTGCTTG CCAACAGCGG TGAAGACTTA
ATCGCTTACT CGACCGGTAG CGATTATGCC GCCAACATAG AGAAAGCAGA AGCGGCAATA
CCAACACAGT CTCGGCTGGC GCCATCTCAA GCGATGAGCA CTATCGATAC CCCTAATGCT
AAGACCATCG CCGAGTTAGT CGAGCAGTTC GATTTAAGCA TCACTAGCAC GGTTAAGACT
TTAATCGTTA AAGGGGCGAC TGAAGAGCAG CCACTTATCG CCTTAGTCAT TCGCGGTGAC
CACGAGCTTA ATGAAGTTAA AGCCGACAAG ATTGACTTAG TGGCCTCACC ACTGGAGTTT
GCATCAGAAG CCGAAATACG TGCTGCCATT GGCGCAGGTC CAGGTTCAAT CGGCCCTGTT
GGTTTGAATA TTCCAGTGTT TATCGATCAC AGTGTCAGCG TTATGAGTGA TTTTGCCGCT
GGTGCTAACC AAGATGATAA ACATTTTATT GGTATCAACT GGGAGCGCGA TTTACCACTG
GCAACGGCTG CTGACATCCG TAACGTTGTC GAAGGTGAAG CCACCCCTGA TGGTTTAGGC
ACTTATGCTA TGGCTCGCGG TATTGAAGTG GGTCATATTT TCCAGCTTGG CACCAATTAC
TCAAAAGCCA TGAACGCCAC AGTATTGGAT GAGAACGGAA AATCTCAAGT GATGCTCATG
GGCTGTTACG GTGTCGGCGT TAGCCGCATA GTGGCAGCAG CGATTGAGCA AAACCACGAT
GATAGAGGCA TAATGCTGCC TGAAGCCTTA GCCCCTTTCA CTGTGGGCAT ATTGCCGATG
AACATGCACA AGTCTCATCG AGTGGCTGAC ATTGCAGAGA AGCTTTATCA AGACCTAAAT
GACGCCGGTA TCGAAGTGTT ACTCGATGAC CGTAAAGAGC GTCCTGGGGT GATGTTTGCC
GATATGGAAC TGATTGGCTT ACCGCATGTG GTCGTCATTG GCGATCGCAA CATAGATGCT
GGCGTATTTG AATATAAAAA CCGCCGCACA GGTGAGAAGC AAGATATTCC ATTAGATCAA
ATTGTCGACT TTCTTAAATC TTCATTAAAA GCTTAA
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| Protein sequence | MRVSKYLLST QKETPANAEV ISHQLMLRAG MIRRNASGLY SWLPSGLRVL RKVEAIVREE
MNKAGAIEIL MPLVQPADLW IETGRWEKFG PELLRFQDRH NRDFVLGPTH EEVITDLVRK
EVSSYKQLPL SLYQIQTKFR DEVRPRFGVM RAREFLMKDA YSFHLDQGTM DETYQAMFTA
YNNIFTRMGL AFRPVLADTG SIGGSLSHEF HVLANSGEDL IAYSTGSDYA ANIEKAEAAI
PTQSRLAPSQ AMSTIDTPNA KTIAELVEQF DLSITSTVKT LIVKGATEEQ PLIALVIRGD
HELNEVKADK IDLVASPLEF ASEAEIRAAI GAGPGSIGPV GLNIPVFIDH SVSVMSDFAA
GANQDDKHFI GINWERDLPL ATAADIRNVV EGEATPDGLG TYAMARGIEV GHIFQLGTNY
SKAMNATVLD ENGKSQVMLM GCYGVGVSRI VAAAIEQNHD DRGIMLPEAL APFTVGILPM
NMHKSHRVAD IAEKLYQDLN DAGIEVLLDD RKERPGVMFA DMELIGLPHV VVIGDRNIDA
GVFEYKNRRT GEKQDIPLDQ IVDFLKSSLK A
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