| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2400 |
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| Symbol | |
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| ID | 4018898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2853097 |
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| End bp | 2855103 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637956427 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_563403 |
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| Protein GI | 91793752 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACTCT ACATTGCCGA GAAACCAAGC CTTGGGCGGG CCATCGCCGA TGTGCTGCCA
AAGCCCCATA AGAAAGGCGA TGGTTTTATT ACCGCCGCCA ATGGTGACTG CGTGTCTTGG
TGTATTGGCC ATCTATTAGA GCAAGCGGAG CCAGATGCCT ATGATGTGGC GTTTAAATCC
TGGAAATTGG AGCACTTGCC CATTATCCCA ACCCAGTGGC AGCTAAAACC TAAATCATCG
ACCCGCAGTC AATTAAGCGT GCTTAAAAAG TTAGTTAAAC AAGCCACTCA CTTAGTAAAT
GCGGGAGATC CAGACCGAGA AGGTCAGCTG CTGGTGGATG AAGTGATTGC CTATCTTGGG
GTCAAGGGGG ATAAGCTCAA TCAAGTGCAG CGGTTGCTTA TCAGTGACTT AAACCCGCAA
GCTGTACAGC GAGCGCTAAA TCAACTCAAG AGTAATCGAG ATTTTATTCC GCTGTCCACC
TCGGCCCTTG CCCGCAGCCG CGCCGATTGG CTCTATGGCA TGAACATGAC TCGGGCCTAC
ACAATTCAAG GCAAGAAAGT GGGTTATCAA GGCGTGCTCT CGGTGGGGCG AGTGCAGACG
CCTCTGCTTG GGTTAGTGGT TAGGCGAGAT GAAGAAATTG AGGCTTTTGT GCCTAAGCCT
TTCTATGAAG TGTTAGCCCA TTTATTAACT GATAAGCAGC AAGGCTTTAC CGCTAAATGG
CAACCAAGCG CGGCCTGCGA GCCCTATCAA GATGAAGAAG GCCGAGTGTT AGTGAAGGGC
TTAGGGCAGA ATGTAGTGGA GCGCATCAGC GGCCAGCCCG CTCAAGTCAC AGGGCTTGTG
GCTCAAGATA AGCGTCAGGC GGCGCCCTTG CCTTATAGTT TGTCTTCCTT GCAAATCGAT
GCTGCCAAGC GTTTTGGCTT AAGCGCTAAA GAGGTGCTAG ATACTTGCCA GAGCCTGTAT
GAACGGCATA AATTGATTAC CTATCCGCGC TCAGATAGCC GCCATTTACC TGTGGAGCAA
TTCTCACTTG CCCCAAGTGT GATTAACGCT GTCATTAAGG GGGCGCCAAC GCTGATTAGT
CACACCGATG CGCCTAACCC TAAGCTTAAA TCTAAAGCCT GGGATGATAG TAAAGTTGAA
GCCCATCACG CTATTATCCC TACAGAGAAA ATCGCACACT TATCGGCCTT GAGCATGAAT
GAAGCGCGGC TGTATCAGCA CATCGCTCGT CAATATTTGG CGCAGTTTTA TCCTGCTTAC
CAATACGCAG AAACCCAGGT TGAAGTCACG ATTGCTGGCG GGATATTTAC CACTAAGGCA
AGGCAGAACA AGTCGTTGGG ATGGAAGAGC TTATTTAGCA ACAATAACAA AATTGTGGAA
CATAACACTG AAAATAATCA AGAGGGAGAG CCAGAGTCTC AAACCTTGCC CGCACTCAAA
AAAGGTCAAT GGCTCAACTG CGAACGAGGA GAACTGCTTG AGAAAATGAC CCAAGCACCG
AAGCATTTTA GCGATGCAAG TTTACTTAGC GCCATGACGG GCATTGGCCG TTTTGTCACT
AATGTAGAGA TAAAAAAAAT CTTAAAAGAC ACCGACGGTA TAGGCACTGA AGCCACACGA
GCTGGGATTA TCGAATTATT ATTTAAGCGC GGTTATTTAT TACGCCAAGG TAAGTCTATC
TTGGCTACGC CAGTGGGCCG GGGGCTGATA AATAGCCTGC CAATGAGTGC GACCACCCCA
GATATGACAG CATTGTGGGA GGCAAGCCTT GATAAAATTA GCCATAAGAC CATGCGCTAC
CAAGCGTTCA TGGCGCCACT GATCCAGCAG CTTAGCGAGC TCATAGGACA AGCGGCGAGC
GAGTTACCCA GGGCCTTGCA AGGGCTTGCA AGTCCATCAA AGGGTAAAGG TTTCCCTAAG
AAAAAATCGG CTTACTCGAC TAAATCAAGC GGGAAATACA AGGCGAAAAA TGCCAAAGCG
GGCACGGTAG CAAAGAAAAA ATCATAG
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| Protein sequence | MRLYIAEKPS LGRAIADVLP KPHKKGDGFI TAANGDCVSW CIGHLLEQAE PDAYDVAFKS
WKLEHLPIIP TQWQLKPKSS TRSQLSVLKK LVKQATHLVN AGDPDREGQL LVDEVIAYLG
VKGDKLNQVQ RLLISDLNPQ AVQRALNQLK SNRDFIPLST SALARSRADW LYGMNMTRAY
TIQGKKVGYQ GVLSVGRVQT PLLGLVVRRD EEIEAFVPKP FYEVLAHLLT DKQQGFTAKW
QPSAACEPYQ DEEGRVLVKG LGQNVVERIS GQPAQVTGLV AQDKRQAAPL PYSLSSLQID
AAKRFGLSAK EVLDTCQSLY ERHKLITYPR SDSRHLPVEQ FSLAPSVINA VIKGAPTLIS
HTDAPNPKLK SKAWDDSKVE AHHAIIPTEK IAHLSALSMN EARLYQHIAR QYLAQFYPAY
QYAETQVEVT IAGGIFTTKA RQNKSLGWKS LFSNNNKIVE HNTENNQEGE PESQTLPALK
KGQWLNCERG ELLEKMTQAP KHFSDASLLS AMTGIGRFVT NVEIKKILKD TDGIGTEATR
AGIIELLFKR GYLLRQGKSI LATPVGRGLI NSLPMSATTP DMTALWEASL DKISHKTMRY
QAFMAPLIQQ LSELIGQAAS ELPRALQGLA SPSKGKGFPK KKSAYSTKSS GKYKAKNAKA
GTVAKKKS
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