| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2388 |
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| Symbol | |
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| ID | 4018886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2840516 |
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| End bp | 2841475 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637956415 |
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| Product | dihydrouridine synthase, DuS |
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| Protein accession | YP_563391 |
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| Protein GI | 91793740 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0313315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGTGC GTGTAATTTT AGCCCCTATG GAGGGGGTTG TTGACCCTTT GATGCGTGAC
ATCTTGTCGA AAATTAACCC TTATGATTTA TTGGTTACCG AATTTGTCCG TGTGGTGGAT
CAACTGCTAC CTGAAAAAGT GTTTCTCAAG CTGTGTCCTG AGTTACATCA GCAAGGCATG
ACAGCCAATG GCACCCCAGT TCGGGTGCAA CTATTAGGTC AAGAGCCACA ATGCATGGCC
GAAAATGCCG TTCGTGCCAT TGAACTTGGC TCAAATGGTG TCGATGCTAA CTTTGGCTGC
CCAGCAAAAA TGGTCAACCG CAGTAAAGGC GGCGCGGTAT TATTGCAATG CCCTGATAAA
GTGCACGACA TAGTCAAAGC CATGCGCCAA GCTGTGTCCA GTGAACACCC TGTCACCGCC
AAAATTCGCT TAGGCTATGA AGATAAATCC TTATTCATGG AAAACGCACT GGCCGTTTAT
GAGGCTGGCG CTACCGAACT TGCTATACAT GCCCGCAGTA AAACTGATGG CTACAAGCCA
CCTGCCTATT GGGAATACAT CACAGAAGTC CGTCAACGCT TGCCTATACC TGTGATAGCC
AATGGCGAAA TTTGGAGCGC TGAAGATGCG CGGCGCTGCA TTGAAGTCAC AGGTTGCGAT
AGCGTGATGA TTGGCCGCGG CGCCATCTCA CTGCCTAACC TTGCTGATAC CATAAAAACA
GGCGCTGCGC CTTACACTTG GGAACAGACC TTATCCCTAT TGATGAGCTA TTCAGAGCTT
GAGCTCAATG GCCGCAAATC AGATTATTAT CCCGCGCGAA TCAAACAGTG GTTTTGCTAT
TTAAATCGTC AATATCCAGA GGCCGATGCA CTGTTTCGTG AACTTAGGGT ATTTAAAACC
ACGGATGAAA TCCGCGCCGT GCTCGATAAG GCACACAGGG CATTGCTCGC CACCCCATGA
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| Protein sequence | MPVRVILAPM EGVVDPLMRD ILSKINPYDL LVTEFVRVVD QLLPEKVFLK LCPELHQQGM
TANGTPVRVQ LLGQEPQCMA ENAVRAIELG SNGVDANFGC PAKMVNRSKG GAVLLQCPDK
VHDIVKAMRQ AVSSEHPVTA KIRLGYEDKS LFMENALAVY EAGATELAIH ARSKTDGYKP
PAYWEYITEV RQRLPIPVIA NGEIWSAEDA RRCIEVTGCD SVMIGRGAIS LPNLADTIKT
GAAPYTWEQT LSLLMSYSEL ELNGRKSDYY PARIKQWFCY LNRQYPEADA LFRELRVFKT
TDEIRAVLDK AHRALLATP
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