| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2352 |
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| Symbol | |
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| ID | 4018846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2793586 |
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| End bp | 2797653 |
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| Gene Length | 4068 bp |
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| Protein Length | 1355 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637956375 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_563355 |
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| Protein GI | 91793704 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAGC TAAAACAAAC TGAAATAGCG CTAGCAGAAG TTAAACAAGC AAAAGCTTGC
CAAACAGATT TAAGCAAGGG CACTAGCATT AGCCCAACCC GCAGCCCACT GGACGCATTA
ACCCTGCCAT TTTTAGGCTC AAGCCTTATC GAAGCCAGTG CCGGAACCGG TAAAACCTAT
ACTATTTCAG GGCTTTACCT AAGACTGCTA CTTGGCCATG GTGAGCTGCC ACCACTGAGC
TGTGAGCAAA TTCTCGTGGT GACCTTCACC AATGCCGCCA CCCAAGAGCT CAGGGATAGG
ATCCGAAAAC GCATCCAAGT GGCGTTTAAA TGCTTCCTTG GGGTGGCCGT AGAGGATGAA
TTTGTCAATG CCTTAAAGCA GGCGTTTCCA GAGTCTGAGC GCCAAATTGC CTTAAAACGG
CTGGATTTAG CCCTTAAATC CTTAGATGAA GCGGCTATTT TTACTATTCA TGGTTTTTGT
CAGCGGATTT TGGCGGATTT AGCGTTTGAA TCTTCATTGC TGTTTGAGTC TGAATTCACC
TTAGATGACA GCGAATTTTT GCACCACAGT GTGCGAGATT TCTGGCGAGA AACCTGTTAT
CCCTTGCCCC CCTATTTAGC CGAAATTATT GCCAAACAGT TTGGTGAACC CGATACCTTA
GCCAGTAAAT TACGTCCGTT ACTTGGGCCA AATGAAGCCA AGACCTTAGG GATTATTCCG
GCGTTTAGCA CCTTAACTCA AGACTTAACC ACCAGCCTTT CACGGCTCAA ACTATTGTGG
CAAAGCGAGC AGGAAAACAC CTTGGCCTTG CTCCACAGCT TGCCCCTAAA CGGCACCCGC
TTTGGTAAGC AAAGCGATGG CTACCCCAAG CTTGGACAAA TGTTTGATGA ATTAAGCCAC
TGGGCCAGTG CTGACTATGG ATTGCCAAGC ACTAAAGCGT TGAGCAGTTT GGCGTTATCA
GAACTTAAAC TCAACAAAGG TGGGGTTGTC CCCAGTGCTG CTGAGGCGCC GTTACTGGCT
CATTTCGATC AGATTAACGC CCTGATAAAC AACTTTATTC CGGCGTTTTT ACTGCGCGCC
AAAGAAGGCA TTAAACAGCG CTTTATGGCA CAAAAACATC AACGCAACTT GATGGCCCCC
GATGATTTAT TGTCAAATCT TGCCAGCGCC TTAGATGCCA ACCCTGATAC CTTGGCAAGC
GCCATTGGCC AGCGCTTCCC TGTGGCGCTT ATCGATGAAT TCCAAGATAC CGATCCGCTG
CAATTTAACA TTTTCAGCAA AGTGTATGGC AAGGCGTCAA GTCCAAGCCA AGAACAGTTA
CAAGCACCGA ACACAGCGAC GGGCTTAAGT TTATTGATGA TTGGCGATCC CAAACAGGCG
ATTTATGCCT TTCGCGGCGC CGATATTCAC ACTTATATTC AGGCAAGAAA CCAGACCCCA
GCCCATTACA ACTTGGCCAC TAACTTTCGC TCCAGTGAAA ATCTGGTGCT CGGGGTGAAC
CGCTTATTTG CCCAACATAA GGATCCCTTT ATCAATCAGG CGATCCCTTT TGATAGTGTA
AAAACCCCTA GCTCGGCGGC AGAGAAACAA CTGATTGGCG CTCAGATATC AAAGGCTGCG
CTGCAAATAA AGCTGCTGGC CGAAGACGCT GAATTTGGGC TTAACAAGAC CCAAGCAAGG
CAGCACTTAG CCGCCGATGC AGCCAGTGAA ATCCGTCAAT TATTGACACA AGCCCAGCAA
GGTGAATGTC AGTTAAGCGA GTCCAATAAG CCGCCGCGCC CCTTGAAAGC TAAAGATATC
GCGGTACTGG TTCGTGACAG GAATGAAGCG GCTGTGATTA AAGCCGCCCT TAATGCTCGT
CAGATAGGCG CGGTGTTTTT AAGCCGCGAT AGCGTGTTCG ACACCTTAGA GGCGCGGGAA
TTACTGCTAC TGCTGCGGGC ATTAGCCAAC CCCAAGGATG AGCGCTTACT CAGAGCCGGC
CTTGCCACCG AATTGATGGG CTATGATGCG CTGCAAATTC ACAGTTTTAA TCAGGATGAA
GACAGTCGTC AGACACTGCT CAGCCAATTT TATCATTGGC ACCAATTGTG GCAACGCCAA
GGGGTGATGC CCGCCCTGTT GGCACTGGCC AATTGGAGTG GTTTGATCCC ACGATTTTTA
GCCAAAGGCT CAACGAAAGA TTTTTTAGCC AAAGGCTCAG CTAACAATTC ACAGAACGAT
TCACACAACA ATAGCGCCGC GCCTCAGTCA ACATCGGCAA CTGAGTTTGA TACCGAGCAA
GATGAAACTC AGCCATCAGA GCTGGCCTCA GGGGAGCGCA GGCTGACAGA TTTTCGCCAT
CTGTGTGAAT TACTGCAACA AAAAGCCACT GAGCTTGATG GCAGCGCTGC CCTTATCAAT
TGGTTTGAGC AACAACTGAT TGCCGCTAAT ACCACAGATG AGCAGCAATT AAGGCTTGAA
AGTGAGCAAA ACCTAGTGCA AATCGTCACG ATTCATAAGA GTAAGGGCCT AGAATACCCA
GTGTGCTTTG TGCCATTTGT GAGTTTAGCC AGAGGCGGGA ATCGTCGTCC CAGTCCCATT
CTTTATCATA AAGAGGGTCA ATTGATTTGG GATATTCACG ACACAGATGA AGGCCTTGAA
AGCTATCAGC AAGCCCATTT AGCCGAAGAC CTACGCCTAT TATATGTCGC GCTGACTCGG
CCTGTGTTTC GCTGCTATTT GTACATAGCC AATCAATGCC GCCAACTCAA AGGCGGCGTT
AGCAGCCAAT TGGCAGAAAC TGGCATAGGC TATCTACTTG GCGCCAAGGA TAAAAAAGTC
GACTTTAGTT TTATTCAAGG GGCGGTGCAG GCAATAACGG CTGATATTCC TGCCATCGAA
GTAAGCTTAG TGAGTGAAAA TCCTGACACC CAAGTGTTAA AAAATAATGA CGATAATGAC
CATCACTTAG CCCCTAAAAC ATTAACTCGC GGTTATCAAA CCCCTTGGCG TGTGGGCAGT
TACTCAGGTT TAGTTAAGCA TCAAGCCCAC GAAAAAGTGA GCCCAGGCGC CGATGATGAA
GAATTCACCG ACGAGCTCAC GCTACACTTT ATTGAGCAAG AGGCTCATGA GATCTTGCCA
GAGCATTTAG CTGACAAGGC ACTAACGCCT GCGCCCCTAG ATGAGCCAGA GCCCCTAGAT
GGACCAGTGC CGTTGGATGA ACCTGTGCCA CTGGATGAAC CTGCACCGCT AGATAGATTC
AGCTTCGAGC GCGGCGCCAA TGCCGGTAGT TTTATGCACT TAGTGTTAGA AAGCTTTGAC
TTTAGCCAGT ATCAAAGCCA GCTGAGTGAT GCGATTAGGG ATGCCATGGT GCACTATGGC
TTTGATGCAG AGCTTTGGCT TGAGCCACTG ACCACATGGT ATCAAGAGAT AGTGACTACG
CCGCTACTGA TCCCTGAGCA AACACCACGA AATACCCAGT TTGCAGCAAG TCAGCAGCAA
AGGCGTTTTA GCTTATCCGA GCTTAATCCT TCTAAAATCA AGGTGGAAAT GGAGTTTTAC
CTGCCGATTT CGGCCCTTGG TAGCCTTGCC CTCAATAAGC TGCTTCAATC CCATGGTTAT
CAGGCGCAGT TAAGCTTTGA TACCTTACGG GGCATGCTCA AAGGTTTTAT CGATTTAACC
TTTGAATATC AAGGGCAATT CTTTATCGCC GATTACAAGT CTAATCATTT GGGCAATAGC
CTTGAGGATT ATCAAATGGC CAATATGGCC AAGGCCATGG ATGAGCATCA ATATCATTTG
CAGTACATCA TCTACACCTT AGCACTGCAC AGATACCTTA AATTGCGCTT GCCAAGTTAT
GACTATGACA CCCACATAGG CGGCTGTTTT TATTTGTTTT TGCGCGGCAT GAGCCCAACA
CACGTAGGCA CGGGAGTTTT CTTTAATCGG CCATCGCTAG ACTTAATCAA GGCTCTGGAT
AGCCTCTTTA GTGACGGCGA AGGAAAAATT GAAGGTAAAA TTGAAAGTCA AAGCGTGTCA
AGCAGTGAAA CTAAGGTAGC AAAACCCCTT AAGGGCTCAA CTCTATGA
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| Protein sequence | MTELKQTEIA LAEVKQAKAC QTDLSKGTSI SPTRSPLDAL TLPFLGSSLI EASAGTGKTY
TISGLYLRLL LGHGELPPLS CEQILVVTFT NAATQELRDR IRKRIQVAFK CFLGVAVEDE
FVNALKQAFP ESERQIALKR LDLALKSLDE AAIFTIHGFC QRILADLAFE SSLLFESEFT
LDDSEFLHHS VRDFWRETCY PLPPYLAEII AKQFGEPDTL ASKLRPLLGP NEAKTLGIIP
AFSTLTQDLT TSLSRLKLLW QSEQENTLAL LHSLPLNGTR FGKQSDGYPK LGQMFDELSH
WASADYGLPS TKALSSLALS ELKLNKGGVV PSAAEAPLLA HFDQINALIN NFIPAFLLRA
KEGIKQRFMA QKHQRNLMAP DDLLSNLASA LDANPDTLAS AIGQRFPVAL IDEFQDTDPL
QFNIFSKVYG KASSPSQEQL QAPNTATGLS LLMIGDPKQA IYAFRGADIH TYIQARNQTP
AHYNLATNFR SSENLVLGVN RLFAQHKDPF INQAIPFDSV KTPSSAAEKQ LIGAQISKAA
LQIKLLAEDA EFGLNKTQAR QHLAADAASE IRQLLTQAQQ GECQLSESNK PPRPLKAKDI
AVLVRDRNEA AVIKAALNAR QIGAVFLSRD SVFDTLEARE LLLLLRALAN PKDERLLRAG
LATELMGYDA LQIHSFNQDE DSRQTLLSQF YHWHQLWQRQ GVMPALLALA NWSGLIPRFL
AKGSTKDFLA KGSANNSQND SHNNSAAPQS TSATEFDTEQ DETQPSELAS GERRLTDFRH
LCELLQQKAT ELDGSAALIN WFEQQLIAAN TTDEQQLRLE SEQNLVQIVT IHKSKGLEYP
VCFVPFVSLA RGGNRRPSPI LYHKEGQLIW DIHDTDEGLE SYQQAHLAED LRLLYVALTR
PVFRCYLYIA NQCRQLKGGV SSQLAETGIG YLLGAKDKKV DFSFIQGAVQ AITADIPAIE
VSLVSENPDT QVLKNNDDND HHLAPKTLTR GYQTPWRVGS YSGLVKHQAH EKVSPGADDE
EFTDELTLHF IEQEAHEILP EHLADKALTP APLDEPEPLD GPVPLDEPVP LDEPAPLDRF
SFERGANAGS FMHLVLESFD FSQYQSQLSD AIRDAMVHYG FDAELWLEPL TTWYQEIVTT
PLLIPEQTPR NTQFAASQQQ RRFSLSELNP SKIKVEMEFY LPISALGSLA LNKLLQSHGY
QAQLSFDTLR GMLKGFIDLT FEYQGQFFIA DYKSNHLGNS LEDYQMANMA KAMDEHQYHL
QYIIYTLALH RYLKLRLPSY DYDTHIGGCF YLFLRGMSPT HVGTGVFFNR PSLDLIKALD
SLFSDGEGKI EGKIESQSVS SSETKVAKPL KGSTL
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