| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2302 |
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| Symbol | |
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| ID | 4018794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2725306 |
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| End bp | 2728614 |
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| Gene Length | 3309 bp |
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| Protein Length | 1102 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637956324 |
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| Product | ribonuclease |
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| Protein accession | YP_563305 |
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| Protein GI | 91793654 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.275092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGTA TGTTAATCAA TGCAACTCAA TCTGAAGAGT TGCGCGTAGC CCTAGTTGAT
GGGCAACAAC TGTATGATTT GGATATTGAA AGCCCAGGTC ACGAACAGAA AAAATCAAAC
ATCTACAAAG GTAAAATTAC CCGTGTAGAA CCCTCTCTAG AAGCGGCTTT TGTGGACTAT
GGCGCTGACC GTCACGGTTT CTTGCCCCTC AAAGAAATTG CCCGCGAATA TTTCCCAAAA
GGTTATTCAT TCCAAGGTCG TCCTAACATC AAAGAAGTGG TGCAGGAAGG TCAACAAGTT
ATCGTTCAAA TCGATAAAGA AGAGCGCGGT AATAAAGGTG CGGCACTTAC CACCTTTATC
AGTTTAGCGG GTTCTTATTT GGTATTAATG CCTAACAACC CTCGTGCTGG CGGCATATCT
CGTCGTATCG AAGGTGATGA GCGTACCGAG CTTAAAGAAG CCATGGCTGA TCTTGAAGTG
CCAAACGGCA TGGGCCTTAT CGTGCGCACC GCCGGCGTTG GCAAAGAAGC CAATGAGCTT
AAGTGGGACT TAAAAGTACT TCAACATCAT TGGGATGCTA TTCAAGAAGC ATCCCAATCA
CAGAATGCTC CTTTCCTTAT TCATCAAGAA AGTAACGTCA TAGTTCGCGC TATTCGCGAC
TACTTACGCC GTGATGTGGG CGAAATCCTT ATCGATCATC CCCGTATTTT TGAAGAAGCA
AAACAACACA TAGGTTTAGT GCGTCCTGAT TTCGTTGAGC GCGTAAAGCT TTATGAATCA
GAAGTGCCAC TATTTACTCA CTTCCAAATC GAATCTCAGA TTGAATCTGC ATTCCAACGT
GAAGTGCGCC TGCCATCGGG CGGCTCAATC GTCATTGACC CAACTGAAGC CTTGACCTCT
ATCGATATCA ACTCGGCCCG CGCCACTAAA GGCGGCGATA TCGAAGAAAC AGCACTTAAC
ACCAACCTAG AAGCTGCCGA TGAAATTGCC CGTCAATTAC GTCTACGCGA CTTAGGTGGC
CTAGTGGTTA TCGATTTTAT CGATATGACC CCAGTTAGAC ACCAGCGTGA AGTTGAAAAC
CGCATGCGTG ATGCTGTGCA TCATGATCGT GCTCGCGTGC AACTTGGCCG CATTTCACGT
TTTGGCTTAA TGGAAATGTC GCGTCAGCGT CTGCGCCCTT CTCTTGAGGA ATCGGCAGCA
CACATTTGTC CACGCTGTCA TGGTCAAGGT ACGGTTCGTA GTACTGAGTC TCTGGCATTA
TCGATTTTAC GTTTGATGGA AGAAGAAGCC ATCAAAGAAA ACACGTCTCA GATAGAAGCC
ATAGTGCCTG TTGATGTGGC CGCCTTCTTA TTAAATGAGA AGCGCAAAGC TATTCGCATC
ACAGAAGAGC GTCACGGTGT TGAAGTGTAC ATCATCCCTG ATGAACACAT GAAAACGCCA
GATTACCGCG TTGTGCGTCA CAGAACTGAT GACGAAATGA CAGAATCTAG CTATAAGCGT
GTTGAAGCCC CGCTATCCAA GCTTTATGAA CCACGTAAAC TTGAACGCGC AGCTGCGCCG
CAACCTGCAC TTAAAGGGTT TGCTGCACCG CAAAAAGCCC CTGATGCCCC TGTAAAAGCA
ACCCCAGTAG TTCAAAGCAC TCAACCGGGT TTAGTTACCC GCATCATAGC CGGCATTAGC
GCCCTGTTTA GCTCACCAAG CAAGAGCGCG GAGCCCAAAG CTGAAACTAA AAGCACCGCA
AGCGAAAGCC GTCCTGCCAA TAACACTCGT CCTCGCCGCA GTGATGGTCG CAGTGATAGC
CGCAACGACA ACCGTCGCAG CCGCAATGAT AGCGACAGCC GCAACCGTAA CGATGCTGAT
AAGAACAAAG ACACTCGTGG CCGCAATAAG AAGACTGATA AAGAACGTAA CGTTCGTGAT
GCAGACGACA AGCGCCCAGC AAGAACTGAT AATCGTAACG ATAGCCGCAC TGACAAGGCA
CTTAAGCAAG AGCAGCCTGT TCAAGAAGCC GTTGAAAGCG TTGAAGTTAA AACTGAGAAA
ACCCCTAAGC AAGAAGCAGC CCGTGAGCGT CGTCAACGCC GCAATATGCG TCGCAAGGTG
CGTATTGAAA ACGAGCAAGT GACTCAAGAT GCTGATCTAA CATCGACTGA CACTGCAGAA
GCTGTCAAAA CCGATGCAGC GCTTAACACT CCAGCTGCAC AAGTAGAGCC GACGCCTACG
CAAGATACAG ACAAGGGTTC ACACCTTGAC CAGTCTGCCA GCGCCAAGAA AAGCGATGAT
TCAGAAAGCA GAAACTCACG TACTCGCCGT CAACCTCGTA AAGAGAAAGC CGAGCAAGTC
ACCAGTGAGT CAAGTGATGA AGCTTCAGCT CCTTCGGTAG CGACTGCTGA AATCCCAGCG
AGCGATGCTG GAACGGTTGA ACCTAAGCAA GCTGTAGATG TCAATGCTGA GCAAGATGAT
GACGCTAAAG AAGGCCGTGA TGGTCAACGC CGTAGCCGTC GTAGCCCACG TCATCTTCGC
GCAGCAGGCC AACGCCGTCG CCGTGATGAA GATGATACCA GCCAAGGCGC GGTATTCTCA
TCGGTTGATG AGCTTGAAAA GCAGCTCAAT GACGAACAAA ATGCCATTGC TGCCCAAAAG
CTCAATGGTG AAGCCCAGCA AGCTGCACCA AGCGCTGTTG AGCAGGCTGA AGTAAGCAAT
GCAGCAAACA ACATCGAGAT CAATGACAAA GCAGAAGCTG CCACTGAAAC AGTGACTGAG
ACAGCGAACG CTGAAGTAAA GACTCAGGAT GTCGACACTG TAGCAAGCCC AGTAGCAGAA
GAGAAAGTTG AAGCTAAAGT TGAAGCAACG ACGCCAGCTG AAACTCAGGC TAATACAGAT
GCGTCTATTG AAGTCGCCAC TGAAGTTAAG GCTGAAGTTA AGGCTGAAGT AACTGCGACC
GCAGAACCAG CAGTTGTCAC TGAAACCAAT AACACTGATG AAGCTATTAA AGCGACGAAA
GAGGCCTCTA ATGCCTCGGC ACCTATGGCT AAGCCTGCGA TTCCTGCGCG TAAAGCCGTG
GCGCAAGTTG CTCCAGCTCT GGCACCTTCA AGCACAGAAG CAAGTACGGT AAGCAGTGCC
GCTGCTAAGC CTACTGGCGG CAGCCGCTTC GGTACTATGG TCAGTTCAGA TATGACTAAA
CCTGTTGTTC ATGAAAGATC ACAGCAGGAT ACGCCAAAGG GCCGTGAATA CGACAATACA
GCTACCGAAG ACGCAACACC TAAGAGTAAA TTAGGTAATA GTGCATCATC GGGTATGCAC
AGACCGTAA
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| Protein sequence | MKRMLINATQ SEELRVALVD GQQLYDLDIE SPGHEQKKSN IYKGKITRVE PSLEAAFVDY
GADRHGFLPL KEIAREYFPK GYSFQGRPNI KEVVQEGQQV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKEAMADLEV PNGMGLIVRT AGVGKEANEL
KWDLKVLQHH WDAIQEASQS QNAPFLIHQE SNVIVRAIRD YLRRDVGEIL IDHPRIFEEA
KQHIGLVRPD FVERVKLYES EVPLFTHFQI ESQIESAFQR EVRLPSGGSI VIDPTEALTS
IDINSARATK GGDIEETALN TNLEAADEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN
RMRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HICPRCHGQG TVRSTESLAL
SILRLMEEEA IKENTSQIEA IVPVDVAAFL LNEKRKAIRI TEERHGVEVY IIPDEHMKTP
DYRVVRHRTD DEMTESSYKR VEAPLSKLYE PRKLERAAAP QPALKGFAAP QKAPDAPVKA
TPVVQSTQPG LVTRIIAGIS ALFSSPSKSA EPKAETKSTA SESRPANNTR PRRSDGRSDS
RNDNRRSRND SDSRNRNDAD KNKDTRGRNK KTDKERNVRD ADDKRPARTD NRNDSRTDKA
LKQEQPVQEA VESVEVKTEK TPKQEAARER RQRRNMRRKV RIENEQVTQD ADLTSTDTAE
AVKTDAALNT PAAQVEPTPT QDTDKGSHLD QSASAKKSDD SESRNSRTRR QPRKEKAEQV
TSESSDEASA PSVATAEIPA SDAGTVEPKQ AVDVNAEQDD DAKEGRDGQR RSRRSPRHLR
AAGQRRRRDE DDTSQGAVFS SVDELEKQLN DEQNAIAAQK LNGEAQQAAP SAVEQAEVSN
AANNIEINDK AEAATETVTE TANAEVKTQD VDTVASPVAE EKVEAKVEAT TPAETQANTD
ASIEVATEVK AEVKAEVTAT AEPAVVTETN NTDEAIKATK EASNASAPMA KPAIPARKAV
AQVAPALAPS STEASTVSSA AAKPTGGSRF GTMVSSDMTK PVVHERSQQD TPKGREYDNT
ATEDATPKSK LGNSASSGMH RP
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