| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2301 |
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| Symbol | |
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| ID | 4018793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2723744 |
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| End bp | 2724700 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637956323 |
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| Product | pseudouridine synthase, RluD |
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| Protein accession | YP_563304 |
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| Protein GI | 91793653 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00163378 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACTG AAACTCCCAC ACAAGTTCAA TTGGTCACAA TTGATGAAGA TCACTTCGAG
CAACGCATCG ATAACTATTT AATCACAGCC CTTAAAGGCG TTCCTAAAAG CATGATTTAT
CGTATCGTGC GTAAGGGCGA AGTGCGAGTG AATAAAAAGC GCATCAAGCC GGAATATAAG
TTACAGATCG GTGATGTTGT GCGAATTCCG CCCGTCAGAA TGGCTGAAAA AGATTATCGC
ACGGCGCCCT CGGCGAACTT ATCCCGAGTG TCTGTGCTTG AAACCCGCAT TATCCACGAG
GATAAGCATT TAATCGTGCT AAATAAGCCT GCAGGTATCG CAGTCCATGG TGGCAGTGGC
ATAGACTTTG GCGTTATCGA AGGTTTGCGC TCACTGCGGC CACAACAGAA ATTCTTAGAA
TTAGTGCATC GTCTGGATAA AGACACTTCC GGGGTGTTAT TGGTGGCTAA GAAACGCAGT
GCCCTGAAAC ATTTACACGA TCAGTTGCGC AATAAAACCA TGCAAAAAGA CTATTTGGCT
TTAGTACGCG GCGAATGGCA GGCAAAAGAT AAATCCATCA AGGCACCGTT ACTTAAAATC
ACCTTAGCCT CAGGTGAGCG TATTGTGCGA GTGAACGCCG AAGGTAAAGC CTCCGAAACG
CGTTTTCGCA TTATGCAGCG TTATGATGGC TGCACCTTAG TGAAAGCGAG CCCTGTGACT
GGCCGTACCC ATCAAATTCG TGTTCATTGC CAGTTTGCAG GTCATGCCAT TGCTTGTGAT
GATAAGTACA GCGAGCAATC CTTTGATGAC AGTATGCGTG TTCACGGCTT AAACCGCTTA
TTTCTTCACG CCGCCGAGCT TAAATTTATT CACCCAGAGA ATGATGAAGT CATGCAAGTG
CAGGCGCCGT TAGATGAGAA TCTAAGCCAA ACCCTAGAAA AGCTTAAAAG GGTTTAG
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| Protein sequence | MNTETPTQVQ LVTIDEDHFE QRIDNYLITA LKGVPKSMIY RIVRKGEVRV NKKRIKPEYK
LQIGDVVRIP PVRMAEKDYR TAPSANLSRV SVLETRIIHE DKHLIVLNKP AGIAVHGGSG
IDFGVIEGLR SLRPQQKFLE LVHRLDKDTS GVLLVAKKRS ALKHLHDQLR NKTMQKDYLA
LVRGEWQAKD KSIKAPLLKI TLASGERIVR VNAEGKASET RFRIMQRYDG CTLVKASPVT
GRTHQIRVHC QFAGHAIACD DKYSEQSFDD SMRVHGLNRL FLHAAELKFI HPENDEVMQV
QAPLDENLSQ TLEKLKRV
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