| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2288 |
|---|
| Symbol | |
|---|
| ID | 4018780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2713197 |
|---|
| End bp | 2714090 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956310 |
|---|
| Product | cytidine deaminase |
|---|
| Protein accession | YP_563291 |
|---|
| Protein GI | 91793640 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0295] Cytidine deaminase |
|---|
| TIGRFAM ID | [TIGR01355] cytidine deaminase, homodimeric |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATC GCTTTATTAA CAGCATAACC CAATTACCCA AACCGTTAGC CAATGCGCTA
ATCCCGTTAC TGCAACAAGA GTTTTGTGGT CATATCGATG CCCATCAAGT CGCTGAGCTT
AAAAAAGCCA GTGGTTTGGC TGAAGCCGAT TTACTGCTGG CTCTGCTGCC GATAGCAGCA
TCTTTAGCCA ATCCCAGCAT CAGTGAATTT TATGTGGGTG CCATAGCCAA GGGAAGCAGC
GGTGATATCT ACATGGGAGC CAATTTAGAA TTACCCAATG AAGCCCTATT TCACTCAGTG
CATGCTGAGC AGAGCGCCAT CAGTCATGCA TGGCTCTCGG GCGAGACTAA GATAGTGGAT
ATCGTAGTTA ACTTCAGCCC TTGCGGCCAT TGCCGTCAAT TTATGAATGA ATTGGTTGAA
GGCAGCTTGG TACGAATTCA TCTGCCGCAG CAAGAAATTA AACCACTGAG CCACTATTTG
CCTTACGCCT TCGGGCCAAG CGATCTGAAT GTGACCACGC CATTACTGTC GAAAAGTGAA
GTAGAGCTTG CACTTAATTC AGATGATCCC ATGATCATCG AAGCCCTAGA TCAGGCGGGA
TTAAGTTACG CTCCCTACAC CCAAAGTTAT GCAGCCGTGG TATTAGAAAC CAAAGACGGT
AAAACTTACT GTGGTCGTTA TGCCGAAAAT GCCGCCTTTA ATCCGTCTAT GTTGCCCATG
CAAATGGCCT TGTCTAACCT AATGCGTCAC GACAAGCAAT TTAGCGACAT CAAGCGTGCG
GTATTGGTTG AGTCATCAAA AGGTAAAATT AGCTTAGTCA GCGCCACCAT GGATGCTCTC
CATGCCGTTG CTGCTGTCGA ACTTGAGCAC ATAGTGGTTG AGCCGCAAAT CTAA
|
|---|
| Protein sequence | MQNRFINSIT QLPKPLANAL IPLLQQEFCG HIDAHQVAEL KKASGLAEAD LLLALLPIAA
SLANPSISEF YVGAIAKGSS GDIYMGANLE LPNEALFHSV HAEQSAISHA WLSGETKIVD
IVVNFSPCGH CRQFMNELVE GSLVRIHLPQ QEIKPLSHYL PYAFGPSDLN VTTPLLSKSE
VELALNSDDP MIIEALDQAG LSYAPYTQSY AAVVLETKDG KTYCGRYAEN AAFNPSMLPM
QMALSNLMRH DKQFSDIKRA VLVESSKGKI SLVSATMDAL HAVAAVELEH IVVEPQI
|
|---|
| |