Gene Sden_2277 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2277 
Symbol 
ID4018769 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp2700884 
End bp2701522 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content47% 
IMG OID637956299 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_563280 
Protein GI91793629 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000858541 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGACT TAAGTGATAT TCGCCGCGAA TATACTAAGG GCGGTTTACG CCGTAAAGAC 
TTGCCAGACA ATCCTATGGC GCTGTTTGAA ACTTGGATGA CTCAGGCTAA AGAGGCCAAC
TTAAGCGATC CTACCGCCAT GTGCGTGGCC ACTGTGGATG AAAATGGCCA ACCGTTTCAG
CGCATTGTGT TATTAAAGCG TTTTGATGAC ACAGGGTTTG TGTTTTTCAC TAACCTTGAG
AGTCGCAAAG CCAAGCAAAT AGCCATTAAT AAGCAGATAA GCCTGTTGTT CCCTTGGCAC
CCTTTAGAGC GTCAAGTGGC AGTGTTAGGC GAGGCCGAAC CTTTGTCTAT GATGGAGGTG
GCTAAGTATT TTATCAGTCG CCCAAAAGAC AGCCAAATAG CGGCCTGGGT ATCGAAACAA
TCCAGTAAAA TCACCGCGAG ACAAGCCCTC GAAGGCAAGT TTAATGAGAT GAAAGCTAAA
TTTGCTCAAG GTGAAGTGCC CATTCCTAAG TTTTGGGGCG GCTTTTTAGT GCGGCCTAAA
AGCATAGAGT TTTGGCAGGG CGGTGAGCAC AGGCTTCACG ACAGATTCAT TTACACTAAA
GCCGCCAGTG AATGGCAGAT AGACAGATTG GCGCCATAA
 
Protein sequence
MSDLSDIRRE YTKGGLRRKD LPDNPMALFE TWMTQAKEAN LSDPTAMCVA TVDENGQPFQ 
RIVLLKRFDD TGFVFFTNLE SRKAKQIAIN KQISLLFPWH PLERQVAVLG EAEPLSMMEV
AKYFISRPKD SQIAAWVSKQ SSKITARQAL EGKFNEMKAK FAQGEVPIPK FWGGFLVRPK
SIEFWQGGEH RLHDRFIYTK AASEWQIDRL AP