| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2266 |
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| Symbol | |
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| ID | 4018758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2689861 |
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| End bp | 2691729 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637956288 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_563269 |
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| Protein GI | 91793618 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTACAAC CTAATGATAA TAATAAGTAT TTTCATATCC AAGCTTCAGA CGCTCAGCGT
CAACGAGAGG CAGGGTTTCA AGCTGTGGAA CGCGCATTTG AATTAAATGC AGATTTTAAC
CGCCACGGTG TGTGGAGTGG TGTGTCGGAG TTGGTTGAAC AGGCCTGGCT CCACCTGAAT
GACCAAGACA GTGACGAATT ACTGGATAAA CATAACTACG CGCTTTATAT GGTGCTTGCT
GAACATAGAG AGCAGATAGG GTTGAAATAT GCGTGTCTGA CAGATACGGC CTCTGGCGCT
GAAAAAACCA GAAATTTTCC CTTGGACAGA GCCTATCGTA TGGTGAACAG TCTCGTGGAG
ATTGTGAAGC AGTGGAAAGC CTCTGCTGGA GCTCAGCAGA AATGGCGCAT AGTGGTTGGC
AATTTTTCTG ATGCGAATTA TTTGGCGAGC CGCTTCTTCC TTGAATTGGC TCGAAGGGTT
ACCGACATAG ATATCCTAGT GCTGACTGAT GGTGAAACCT TGCCGTTTGA TCTGGCACAA
CTGGGAATGG CTTTAAACCC AGTTCACCCT ATCGATACCT TATCAGCGCA AGCTGAGCCA
TTGATCCGAG AAATGCCCGC CTTCGATGCA ACATTGTACG AACAGCTTAT TTCAACCAAT
GACATGATGA GCTGGGAGAA TAGTTTCTCA TCCATGCTGG CACATTTTGA GCAGACAGGG
GATCCACTCT CAGTCGCTAA AGTCGCCATT CGTGCGCTGT GCTTATATAA CCATTACGGC
TACTACCATG AGTCCGCAAG CTTCGTCGAT AAAGTCCTGC CCTATCTTGA GCAACTCGTG
GGAGACGATC AAATCACGCG TTGGTCATAC CTCGGCAATA TTTTCCAAGG CATGGTCACC
ACAGGCCGAG AACATGAAGC GCTGGCGGTT ATATTGAAAT ACGCACAGCC CTATCTGACG
CAGCCCAGCC TAAAAGCCAG AATGCATTAT TTATTGTCCA TGGTTTATTT GCGTTATCTG
AAACAGCAAG ACCTAGAAAA AGCCCAACAA CATATCATGC TATCTAAACA AGAGATTGCC
ACGGCACAAG GCAAGGTCAG CGATTTGGAG CATGATTTCT TAAGTGTGTT TATTGATAAC
GGACTTGCCT TTCTGAGGGT GCGACAGGGA CGCAGTGAAG AAGCCCTCCA ACTTTGCTCC
GAAGGTTTTA ACTTCCTCAC TGAACGGCTT GGGGATGAAG CCCATAAATT ACACCGCTCC
GTACTGCTGT ACAATTCTGC TCAAGTCTAC ACCCTATTAG GTGAAACTGA GGCCGCGCTG
AAATTTTACA ATGAAGCCGT GGAAATGGAT CCCTACTACT CAGAATATTA CAACGAGATA
GGCAATTTAT TGCAGCGCTT AGGTCGATAT CAGCAAGCCA TCGGCATGTA TGAGTCGGCC
ATCAAATACA GTGCACCCTA CTCTGAAGTG TATTCCAATA AGGGGATGTG CCATGTATTT
TTGGAGCAAT GGCCTGCAGC GCTAGAATGT TTCGCCCACA GCTTGGAATT GTCGCCGCAT
CAGCAAGATG TTTACCTTGT CAGAGGGGAT GTTTTCTCTG GATTCGATGA GCAGGATAAG
GCGTTTGCGG ATTATTCCCG CGCCATATCC CTAACGGGTG ATTCTGCAAC CGCTAGGGTT
AATCGCGCTG TGATCCATTA TGAGCGTGAA CAATATGACG CAGCCTTGCG GGACATGAAT
AGGGCCATTG AATTGGAGCC AAATAACCCT TCTCATTATG AAAATCGGGC CGAAATATTT
AAAGCCTTAG GAAATGAAGC TCAAGCCGAG GCCGATTTAG CCCGTAATAT TGACTTTGTG
ACCGCCTAA
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| Protein sequence | MLQPNDNNKY FHIQASDAQR QREAGFQAVE RAFELNADFN RHGVWSGVSE LVEQAWLHLN
DQDSDELLDK HNYALYMVLA EHREQIGLKY ACLTDTASGA EKTRNFPLDR AYRMVNSLVE
IVKQWKASAG AQQKWRIVVG NFSDANYLAS RFFLELARRV TDIDILVLTD GETLPFDLAQ
LGMALNPVHP IDTLSAQAEP LIREMPAFDA TLYEQLISTN DMMSWENSFS SMLAHFEQTG
DPLSVAKVAI RALCLYNHYG YYHESASFVD KVLPYLEQLV GDDQITRWSY LGNIFQGMVT
TGREHEALAV ILKYAQPYLT QPSLKARMHY LLSMVYLRYL KQQDLEKAQQ HIMLSKQEIA
TAQGKVSDLE HDFLSVFIDN GLAFLRVRQG RSEEALQLCS EGFNFLTERL GDEAHKLHRS
VLLYNSAQVY TLLGETEAAL KFYNEAVEMD PYYSEYYNEI GNLLQRLGRY QQAIGMYESA
IKYSAPYSEV YSNKGMCHVF LEQWPAALEC FAHSLELSPH QQDVYLVRGD VFSGFDEQDK
AFADYSRAIS LTGDSATARV NRAVIHYERE QYDAALRDMN RAIELEPNNP SHYENRAEIF
KALGNEAQAE ADLARNIDFV TA
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