| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2199 |
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| Symbol | |
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| ID | 4018691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2609495 |
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| End bp | 2611297 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637956222 |
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| Product | Lipid A export ATP-binding/permease protein MsbA |
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| Protein accession | YP_563203 |
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| Protein GI | 91793552 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCAT CACCCAAAAA TGAAATGAGC ACAGTATTTA AACGCTTGAT GACCTACGTC
ATGCCAATGA AAGGCATGCT AACCCTGTCA ATCTTAGGCT TGATTGTTTA CGGTCTTGTG
GATGCGGCAT TCATTGCTTT TATCAAACCG TTTATCGATG AAGGTTTTAG CCAAAACCCC
ACCGTTGTGG CTGGGGTTGA ACTGCCAACC AGTGGCGGGT TTAGTGCCAA TAAAGACGTG
ATGTTAATGG CGCCTCTCGT GGTGATTGGC ATGTTTACTT TGCGCGGAGT GGCAAACTTT
GTCTCTACTT ACTGCATTTC ATATTTAAGT GCTCAGCTTA TTATGGATAT GCGCCAGCAA
GTGTTTGAGC ACTATTTGCG CTTACCTGTG AGTTATATCG ACCGCGAGAA TAGCGGTAAC
TTGATCTCAA GAGTCACTTT CGATACCGAG CAGATAGCCC GTGCTTCTGG CAGCGCCTTA
ATTTCAATCG TCCGAGACAG CATTACTGTG ATTGGCATGT TGGCATTGAT GTTTTTCTAT
TCATGGAAAT TGTCACTGTG CATCTTAGTC ATAGGCCCCT TGATGGGGGT GGTGATAAGC
ATAGTCAGCA AGCGATTCCG TAAAGTCTCA GTGCAAATTC AGTCGGCCAT GGGCGGGGTG
ACTGCCACCA CGGAGCAGAT GATAAAAGGT CACAAAAATG TCTTATCATT TGGTGGTCAG
GAAACTGAAA GTAAACGCTT TTATGAAGTT AACGATCGCA ACCGTTATCA GAATATGAAG
CTTGCGATGG CGCAATCTGT CAGCCAGCCT GTGATCATGA TCATCGGCTC CTTCGCCTTG
GCATTCGTGC TCTATGCCGC CAGTTTAGAT AGTATGAAGC TTGAGCTCAC CGCAGGCACC
TTTGCGGCTA TCCTAGGCGC TATGCTTGCC ATGCTGCAGC CAATTAAAAA CTTAACTCGA
GTCAATGCCG AGTTTCAGCG CGGGATAGCA GCCTGCACCA CGGTATTTGA ATTATTGGAT
ACCTTGCCTG AATCCGATAC GGGTGCCCAT CAGGTTGAAC GTGTGCAAGG CCATTTACGC
TTTGATAACG TCAGTTTCAG TTATCCAGGA CAGGCTAAAC CTGCGCTGAA TAACATAGAT
TTTGACGTCA AGCCGGGTAA AACAGTGGCA TTGGTGGGGC GTTCAGGCTC TGGTAAATCC
ACCATGGCAA GCCTTATCAC ACGTTTCTAT ACTGGCCTTG AACAAGGGGA TATCCGCCTT
GATGATGTCA GCATTTACGA CTATTCACTT AAATCGTTGC GCTCGCAAGT GGCGCTAGTG
TCACAGCAAG TGACCTTATT TAATGACTCT ATCGCTAATA ATATTGCTTA CGCTTATCCA
GGTGAAGTGA GCCGTGAGCA AATTCTTAAG GCGGCCACAC TCGCTCATGC GATGGAGTTT
ATCGAACAGC TTCCTGAAGG TTTGGACACC CAAGTGGGGG AAAACGGGGT ATTGCTCTCT
GGCGGTCAGC GTCAACGTAT CGCTATTGCC AGGGCCATGC TGCGCGACGC CCCAGTATTA
ATCTTAGATG AAGCTACATC GGCGCTGGAT ACTGAATCGG AAAAAGCCAT TCAGTTGGGA
CTCGATAATT TACGTCATAA TCGTACGTCG ATTGTGATAG CGCACAGGCT TTCTACCATA
GAAAGCGCCG ATGAAATTTT AGTGATAGAT CAAGGCAAGA TTATCGAACG GGGCACTCAT
GCTAGCCTTA TCGAGAAAAA GGGTGCCTAC GCAGGTTTGT ATCAGATGCA GTTTGGCGAA
TAA
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| Protein sequence | MTASPKNEMS TVFKRLMTYV MPMKGMLTLS ILGLIVYGLV DAAFIAFIKP FIDEGFSQNP
TVVAGVELPT SGGFSANKDV MLMAPLVVIG MFTLRGVANF VSTYCISYLS AQLIMDMRQQ
VFEHYLRLPV SYIDRENSGN LISRVTFDTE QIARASGSAL ISIVRDSITV IGMLALMFFY
SWKLSLCILV IGPLMGVVIS IVSKRFRKVS VQIQSAMGGV TATTEQMIKG HKNVLSFGGQ
ETESKRFYEV NDRNRYQNMK LAMAQSVSQP VIMIIGSFAL AFVLYAASLD SMKLELTAGT
FAAILGAMLA MLQPIKNLTR VNAEFQRGIA ACTTVFELLD TLPESDTGAH QVERVQGHLR
FDNVSFSYPG QAKPALNNID FDVKPGKTVA LVGRSGSGKS TMASLITRFY TGLEQGDIRL
DDVSIYDYSL KSLRSQVALV SQQVTLFNDS IANNIAYAYP GEVSREQILK AATLAHAMEF
IEQLPEGLDT QVGENGVLLS GGQRQRIAIA RAMLRDAPVL ILDEATSALD TESEKAIQLG
LDNLRHNRTS IVIAHRLSTI ESADEILVID QGKIIERGTH ASLIEKKGAY AGLYQMQFGE
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