| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2192 |
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| Symbol | |
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| ID | 4018684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2598981 |
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| End bp | 2600039 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637956215 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_563196 |
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| Protein GI | 91793545 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAGGT TCATTAACGT TAAAACCTTA GCACTTTCCT TACTTTGCAT CGCTGTGCTA
ACTGGCTGCG AACAACCCCA AGAGCAAGCC AAAGAAGATA AGTTTGTCGT TCCGGTGGAA
ACAGCCTTAG TGGGCCAAGG CCATGTATCC TCCTTCTATA GCACTACCGC CACCTTAGAA
GCGCCTGAAG AAGCTCATGT GCTAAGCCGG GTATCTGGTC TGGTTGAAAA AATTCTTGTT
GAAGAAGGTG ATAGAGTCAC TAAAGGTCAG GTGCTTGCCG TTATCGATCC TAAGCGTCAA
AAATATGAGT TTAATCGCTC AGAAGCCGAA GTGCAGATCA TCGAGCAAGA GCTTAATCGT
CTAAATAAAA TCAACAATAA AGAGTTTGTA AGCCAGGATG CCTTAGCCAA GTTAGAATTT
AACCTGCAAG CGGCCAAAGC CCAGCGAGAT CTCGCCGAGC TTAAGTTAAA AGACAGTCAA
ATCACCTCAC CAATAAACGG TGTGGTTGCC CACCGCTTAG TGAAATTAGG CAACATGGCC
AAGGAATTTG ATGAACTGTT TTACATAGTC AATCAAGATG AACTTCATGG CATAGTCCAC
TTACCAGAGC AGCAATTAGC AAGCTTACGC CTAGGCCAAG AAGCCAAAGT CTTTAGTCAG
CAGAGCCAAC AAGATGTCAT CGCACATGTA TTAAGAATAA GTCCAGTGGT GGATGCCAAT
AGCGGCACCT TTAAGGTCAC ACTCGCCGTG CCTAACCACA AGGCCCAGCT TAAATCAGGC
ATGTTTACTC GGGTTGAGCT CAAGTACGAC ACCCATGATA ACGCCATCAC AGTGCCTTAT
AATGCCGTCA TCAATCAGGA CAACATACTG GCCCTGTATA TCATTAAGGA CGATAAAGCC
CTTAGGCGTG AAGTCAGCTT AGGCTACCGT GAAAATGAAA TCGTTGAAGT TATCGACGGC
GTCGAACCGG GTGAGCAAGT GGTTATTCGT GGTCAGCAAA ATTTAAAAGA CCAATCCTTG
GTTGAAGTCA TCACCCCACT TAACTTTGCC GCTAAATAA
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| Protein sequence | MDRFINVKTL ALSLLCIAVL TGCEQPQEQA KEDKFVVPVE TALVGQGHVS SFYSTTATLE
APEEAHVLSR VSGLVEKILV EEGDRVTKGQ VLAVIDPKRQ KYEFNRSEAE VQIIEQELNR
LNKINNKEFV SQDALAKLEF NLQAAKAQRD LAELKLKDSQ ITSPINGVVA HRLVKLGNMA
KEFDELFYIV NQDELHGIVH LPEQQLASLR LGQEAKVFSQ QSQQDVIAHV LRISPVVDAN
SGTFKVTLAV PNHKAQLKSG MFTRVELKYD THDNAITVPY NAVINQDNIL ALYIIKDDKA
LRREVSLGYR ENEIVEVIDG VEPGEQVVIR GQQNLKDQSL VEVITPLNFA AK
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