| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2189 |
|---|
| Symbol | gltA |
|---|
| ID | 4018681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2594836 |
|---|
| End bp | 2596173 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637956212 |
|---|
| Product | type II citrate synthase |
|---|
| Protein accession | YP_563193 |
|---|
| Protein GI | 91793542 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0372] Citrate synthase |
|---|
| TIGRFAM ID | [TIGR01798] citrate synthase I (hexameric type) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00268971 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCTA ACGAAGCTGC GCTCGTTGAA AAGATAAGTA AGGAGAAGGG TATGGCTGAC
AAAATGGCCA AATTAGAATT ACCAGAAAAC AATTCAATCG AATTGCCGAT CATGCAGGGC
TCTGCCGGTT TCGATGTCAT CGACATCAGC AAACTTGGGA AAAAGGGCTA CTTCACTTTC
GATCCAGGCT TTTTAGCCAC AGCCTCATGC GAGTCTGCCA TCACCTATAT TGATGGCGAT
AAAGGTATAT TATTACACCG CGGTTATCCA ATCGACCAAT TAGCGACTGA ATCAGATTAT
TTAGATCTAT GCTACTTGTT GCTGTACGGT GAATTACCCT CAAAAGCACA GTATGCTGAA
TTTGTTGCCA CTGTTAAACA ACACACTATG GTGAATGAGC AGCTTGCCTT CTTCTTTAGA
GGTTTCCGCC GCGATGCTCA TCCTATGGCC ATGTTATGTG GTGTCACAGG TGCCTTGTCT
GCATTCTTCC AAGACTCACT GGATGTGAAC AATCCAGAGC ACAGAGAAAT CGCTGCTTAC
CGTTTAGTGT CTAAGATGCC AACAATTGCC GCCATGTGTT ACAAGTACTC TGTCGGTCAG
CCATTTATTT ACCCACGTAA CGATTTAAGC TACGCAGGTA ACTTCTTGTC TATGATGTTC
GCAACCCCAT GTGAAACCTA TGTGGTTAAC CCTGTGATTG AACGTGCTAT TGACCGTATC
TTCGTATTAC ACGCAGATCA CGAGCAAAAT GCATCGACAT CAACCGTGCG TTTAGCCGGC
TCTTCGGGTG CAAACCCATT TGCTTGTATC GCAGCGGGTA TCGCTTCTCT TTGGGGCCCT
GCACACGGCG GCGCTAACGA AGCGTGTCTG AACATGCTTG AAGAAATCGG CAGTGTTGAT
CGCATTCCTG AGTTTATCGA GAAAGCCAAA GACAAGAACG ATCCATTCCG CTTAATGGGC
TTTGGTCATC GTGTTTACAA AAACTTTGAC CCACGCGCCA AAGTGATGCG TGAAACTTGC
CATGAAGTGC TTAAAGAACT TAAGGTTAAA GATCCATTAT TGGATGTGGC CATGGAACTT
GAGCGTATTG CCCTTGAAGA TGAGTACTTC ATCTCTAAGA AGCTGTACCC GAACGTTGAC
TTCTACTCTG GCATTATCAT GAAAGCCATT GGTATTCCAA CCAGTATGTT CACTGTGCTG
TTCGCCCTAG CGCGCACGGT CGGCTGGATC TCTCATTGGA AAGAAATGCT AGACCAACCA
GGTCACAAAA TCAGTCGTCC ACGTCAGTTG TACACAGGTG CAACTCACAG AGACTTCGTG
GCGAAAGAAA AGCGTTAA
|
|---|
| Protein sequence | MAANEAALVE KISKEKGMAD KMAKLELPEN NSIELPIMQG SAGFDVIDIS KLGKKGYFTF
DPGFLATASC ESAITYIDGD KGILLHRGYP IDQLATESDY LDLCYLLLYG ELPSKAQYAE
FVATVKQHTM VNEQLAFFFR GFRRDAHPMA MLCGVTGALS AFFQDSLDVN NPEHREIAAY
RLVSKMPTIA AMCYKYSVGQ PFIYPRNDLS YAGNFLSMMF ATPCETYVVN PVIERAIDRI
FVLHADHEQN ASTSTVRLAG SSGANPFACI AAGIASLWGP AHGGANEACL NMLEEIGSVD
RIPEFIEKAK DKNDPFRLMG FGHRVYKNFD PRAKVMRETC HEVLKELKVK DPLLDVAMEL
ERIALEDEYF ISKKLYPNVD FYSGIIMKAI GIPTSMFTVL FALARTVGWI SHWKEMLDQP
GHKISRPRQL YTGATHRDFV AKEKR
|
|---|
| |