| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2185 |
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| Symbol | sdhA |
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| ID | 4018677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2591929 |
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| End bp | 2593695 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637956209 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_563190 |
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| Protein GI | 91793539 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00800222 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTATTC CAGTACGCGA ATTTGATGCA ATCGTAATCG GCGCCGGTGG CGCTGGTATG
CGCGCTGCAT TGCAGATTTC TAAAGAAGGT AAGAGCTGCG CGCTGTTATC AAAAGTATTC
CCAACCCGCT CTCATACGGT ATCGGCTCAA GGCGGTATTA CTGTCGCCTT AGGCAACGCC
CATGAAGATC ACTGGGAACA GCACATGTAC GATACAGTTA AAGGTTCCGA TTTTATCGGT
GACCAAGACG CTATCGAATT TATGTGTCAA ACAGGTCCAG AAGCCATCAT AGAACTAGAG
CACATGGGTC TGCCATTCTC TCGTTTTGAA AACGGCACTA TTTATCAACG TCCTTTTGGC
GGCCAATCAA GAAACTTTGG TGGCGAGCAA GCGGCCCGTA CCGCGGCAGC GGCGGACCGT
ACCGGTCATG CCTTGCTTCA CTGCTTGTAT CAGCAAAACG TTAAGCATAA AACCCAAGTG
TTTTCTGAGT GGTATGCCCT TGATTTAGTG AAAAACGAAG ACGGCGTGAT TGTCGGTTGT
ACTGCAATCG AAATCGAAAC CGGTGACATC GTTTATTTCA AAGCTAAGGC AACCATACTA
GCCACTGGCG GTGCAGGGCG CATTTATGCC TCAACCACTA ACGCTCATAT CAACACGGGT
GATGGCGTGG GTATGGCAGC GCGTGCTGGG GTTCAATTAC AAGACATGGA AATGTGGCAG
TTCCACCCGA CGGGTATTGC TGGCGCAGGT GTGTTGGTGA CCGAAGGTTG TCGTGGTGAA
GGTGGATACC TGCTAAACAA AGACGGCGAG CGTTTCATGG AGCGTTATGC ACCAAACGCC
AAGGATTTAG CATCTCGTGA CGTGGTAGCA CGTTCTATGA TGACTGAAAT TCGTGAAGGT
CGTGGCCTCG ATGGTCCATT AGGCCCACAT TGTTTATTGA AGCTTGATCA TTTAGGTAAA
GAGACCCTAG AAGCCCGTCT TCCTGGTGTG TGTGAATTAT CACGTACCTT TGCCCATATC
GATCCGGCCG ATGGTCCAAT CCCTGTACTG CCAACCTGTC ATTATATGAT GGGTGGCTTG
CCTGCTAAAG TGAGCGGCCA GGTTATTCGC ATGAATGAAG ACGGCACAGA ACAAGAAGTG
ACAGGTCTGT TTGCAGTGGG CGAAATTGCC TGCGTATCAG TCCACGGTGC TAACCGTTTA
GGCGGTAACT CGCTACTGGA TTTAGTGGTC TTTGGCCGCG CAGCAGGACA GCATTTAGGT
AAGGCACTGG ATGAAACTGC CGATCCAAAA GCGCCAACTG AAGCCGAAAT CAACGCATCA
CTTGCACGTC TAAACCGTTG GGAAAGCAAC AAAGACGGTG AAGACCCTGC GGTCATCCGT
AAAGATCTTC AATTGTGCAT GCAACTTAAC TTCTCTGTGT TCCGCAGTGG CGATGCCATG
GCTGAAGGCT TAGAACAGTT ACAGGCCATT CAGAAGCGTC TTGAAAATGC AAAGTTATCT
GACAATTCAA AAGAATTTAA TACTCAACGT ATTGAGTGCT TAGAGCTAGA TAACTTAATG
GCAACGGCAT TAGCAACGGC TTACGCTGCT AACTTCCGTA CCGAAAGCCG TGGTGCACAT
TCACGTGAAG ATTTCTTGGA CCGTGATGAT GATAATTGGT TATGCCACAG TATATTTGAC
CCTGTGACAG TGGAAATGCG CAAGCGTGAT GTGAATATGT CACCTAAGCT ACGTGCAGCG
TTCCCACCGA TTAAACGTAC CTACTAA
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| Protein sequence | MSIPVREFDA IVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFE NGTIYQRPFG
GQSRNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTQV FSEWYALDLV KNEDGVIVGC
TAIEIETGDI VYFKAKATIL ATGGAGRIYA STTNAHINTG DGVGMAARAG VQLQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PAKVSGQVIR MNEDGTEQEV TGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETADPK APTEAEINAS LARLNRWESN KDGEDPAVIR KDLQLCMQLN FSVFRSGDAM
AEGLEQLQAI QKRLENAKLS DNSKEFNTQR IECLELDNLM ATALATAYAA NFRTESRGAH
SREDFLDRDD DNWLCHSIFD PVTVEMRKRD VNMSPKLRAA FPPIKRTY
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