Gene Sden_2163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2163 
Symbol 
ID4018655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp2562082 
End bp2563122 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content44% 
IMG OID637956187 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionYP_563168 
Protein GI91793517 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGAGCG AACTAAACCC ACTGGGTCTT TTAGGCATTG AATTTACAGA ATTTGCCAGC 
CCAGATACCG ATTTCATGCA CCAAGTCTTT ATCGACTTTG GCTTCTCTAT GCTTAAAAAA 
GCCAAGAACA GCGATATCAT TTATTACCAG CAAAATGACA TTAACTTTCT ACTGAGCAAG 
AGCAAAAAAG GCTTCTCGGC AGAATTTGCA AAGTCTCACG GCCCTGCCAT TTGTTCTATG 
GGCTGGCGCG TTGAAGATGC AGCCTTTGCT TTCAAAGCGG CGGTTGAGCG CGGTGCAAAA 
CCTGCGACAG ATGCCAGTAA AGACATGCCT TACCCCGCCA TTTATGGCAT AGGCGACAGC 
TTGATTTACT TTATTGATAC CTTTGGCGCC GACAACAACA TCTACATGAC TGATTTCGTT 
GATTTAGAAG ACCCAATCCA TACCCAAGAA AAGGGCTTTA TGGAAGTCGA TCATTTAACC 
AACAATGTCT ATAAAGGCAC CATGGAGAAG TGGGCCAATT TTTATAAAGA CATCTTTGGC 
TTTACCGAAG TGCGCTACTT TGACATTAAA GGCTCGCAAA CCGCTTTGGT TTCTTACGCC 
CTGCGCTCGC CCGATGGCAG CTTCTGCATT CCCATCAACG AAGGTAAAGG CAACGACAAG 
AACCAAATCG ATGAGTATTT GGGTGAATAC AATGGCCCTG GAGTGCAGCA TTTAGCCTTC 
AGAAGCCGTG ATATCGTCGC ATCCCTCGAT GCAATGGAAG GCACTGCAAT TCAGACCTTA 
GATATCATCC CTGAATATTA TGAAACTATC TTCGATAAGC TTCCACAAGT GACTGAAGAC 
AGAGAAAAAA TTAAGCATCA TCAGATTTTG ATCGATGGCG ATGAAGATGG ATATCTATTA 
CAGATTTTCA CCAAGAATTT GTTTGGCCCT ATTTTCATCG AAATCATTCA GCGTAAAAAC 
AACCTAGGTT TCGGTGAAGG TAACTTTAAA GCCTTGTTTG AATCTATTGA ACGCGACCAA 
GTGCGCCGCG GCGTACTGTA A
 
Protein sequence
MASELNPLGL LGIEFTEFAS PDTDFMHQVF IDFGFSMLKK AKNSDIIYYQ QNDINFLLSK 
SKKGFSAEFA KSHGPAICSM GWRVEDAAFA FKAAVERGAK PATDASKDMP YPAIYGIGDS 
LIYFIDTFGA DNNIYMTDFV DLEDPIHTQE KGFMEVDHLT NNVYKGTMEK WANFYKDIFG 
FTEVRYFDIK GSQTALVSYA LRSPDGSFCI PINEGKGNDK NQIDEYLGEY NGPGVQHLAF 
RSRDIVASLD AMEGTAIQTL DIIPEYYETI FDKLPQVTED REKIKHHQIL IDGDEDGYLL 
QIFTKNLFGP IFIEIIQRKN NLGFGEGNFK ALFESIERDQ VRRGVL