| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2120 |
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| Symbol | |
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| ID | 4018612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2517774 |
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| End bp | 2519936 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637956144 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_563125 |
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| Protein GI | 91793474 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACTCA CAGAGCATCA GGAACTATTG GAACAAATAG TTAACTCTGA AGCAAAAGCA
TTAGGCCAGT ATTCTCAGAC AGCCAATATG TGCTGTCAGC TTCTGCTTGA ACATTTTCAT
GGTTTCAATG TGATGGTGTG GCAATTAGAT CAACAAGATC ATAGACTAAC ACCTCTAGCT
AGCGCAGATT TAAGCAGCCA ATCCCCTCTA TCAAGCACAT CTAGACCGCA ATTATCCAGT
GATTATTTAC AGCATCTTCA TGATCACAGG TTCTTTGTTG CCACTGATGA TGCGGATATG
CCTTTTATAG TAAGCCGCTA TCAGCACGGA GAGCCAGTTA AACAAATATT TGATGTGGCG
ATTCGTATTA ATGGTCATAT AGAAGGCCTG CTAAGCCTTG AATTTGAATC TATTATTCCG
TTACAAGAGC AAGATATTCA ATTTGTGAGT CAAGTCGCGG ATCAGCTCGC TTTAGCGCTG
GCCACTGAGC GCGGTTATGA AAAAGATGAA GATCTCACCC TTTATTTGAG CGCTACCGAG
CAAGCTGAGC ATTTGATTAT TTTAATTAAT CTTAAAACTC AAATGATAAG GTACGTTAAC
CCAGCCCATC AGAAATTAAC TGGGATCCCA AGAGAACAAG TTCAAGATCA ACACGCCAGC
AAATTGGCGT TTTTCCGCGG TGCCAATGAG CAAGTGACTC CCATGATTAA TGCCCTACTA
AGAGGGGAAA CCATTCAAGG TGAACGTCAG ATGCAGCATG TGGACGAGAG TCAGTATTGG
GTACATTACC ATGCGCGTCA CTTTGTGACC TCTCGGGGTA ATGATTTTGC CTTAGTTGCC
GTGCATGATA TTTCAGCTCA ATATCGTCAT AAGGCAGAAC TCGAGCGTTT AGCTTGGAAT
TGTAATTTAA CCGGGTTACA CAATAGGTTG CATTTCACTC AAAATTTAGA TAAAAGCGCG
AATGGAGTAT TAATATTAGT TGATTTACTT GGTTTTAATC GTTTTAACGA TACCCATGGC
CATGAACGCG GGGATGCGCT GCTTATCGAA GTTGCCCGAA GGGTCAAACA TTTTGCTAAT
TACCATAATG CCATCGATGT GGCACGAATT GGCAGCGATG AGTTTGGTAT ATTATTACCA
GAAATTGGCG AACTCGCTGA ATTAGAACGC TGCGTGGCTA AACTTTACGA GAAATTATTA
GCCCCTGTGA TTATCGCTCG GGATAAAGTC GAACCCAAAC CTGCCATCGC GGTGGTGAAT
ATAGAGTCTG TGGTGGACTT ATTTGCGCCA CTCACTTGCG CTGATATTGC ACTGCAATAC
GCCAAGAGAA AAGCCCTTAA GCACTATCAA ATATTTAATA CCCAATTGCT TGAGGCGTTT
AAGGCCAATA TCGAAATTGA ACGCGATTTA CAGCAGGCCC TTAAAAGCCG TGAATTTGAG
CTTTATTATC AACCCTTAAT GGATCTACAA ACTCAGCGCT ATATAGGGGC TGAAGCCCTA
ATCCGTTGGC ACCATCCTAA AAAGGGCATC TTGTATCCAG GGGCCTTTAT TGAAATCGCT
GAACAGACGG GGTTAATCAA TGCGATGGGA CAATGGGTGC TGGAAACCGC CTGTAAACAG
TTAAATTTGT GGCAGCACAA AAATATCGAC TTGACCATGC ATGTGAATGT GTCGGCGCGG
CAGTTTTTCA GTAGTCAGCT TTACGCCCAA GTTTGGACCT TAGTGACTCG CTATCGTATC
AAACCCAAAC GACTGATTTT GGAAATAACC GAAACTGAAT TGATGAGTGA TATCGAACAC
GCCACTAAGT TGTGTAAAGA ATTGGCCGAA CTTGGCGTGG GGCTAGCCAT CGATGACTTT
GGTACTGGCC ACAGTTCCAT GCGGTATTTA AAGCAGTTCC CTATCTCCAA ACTTAAGATA
GACAGATCCT TTGTAATGGA CATCAGCAGT AGCCGTGAAA GCCGAGAGAT TGTCAGTGCC
ATTATCGCCA TGGCCAGTGC GCTAAATATT TCATTGACTG CCGAAGGGGT GGAAACTAAG
GAGCAAGAAG CCTTCCTCAC ACAGAGTGCT TGTCATCATG CCCAAGGGTT TTTATACAGT
CCTGCGGTGC GGGAAAGTGA TTTCAGTCAC TTGCTTACAC TTCAGCAGAG CTTAATAAAC
TAA
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| Protein sequence | MELTEHQELL EQIVNSEAKA LGQYSQTANM CCQLLLEHFH GFNVMVWQLD QQDHRLTPLA
SADLSSQSPL SSTSRPQLSS DYLQHLHDHR FFVATDDADM PFIVSRYQHG EPVKQIFDVA
IRINGHIEGL LSLEFESIIP LQEQDIQFVS QVADQLALAL ATERGYEKDE DLTLYLSATE
QAEHLIILIN LKTQMIRYVN PAHQKLTGIP REQVQDQHAS KLAFFRGANE QVTPMINALL
RGETIQGERQ MQHVDESQYW VHYHARHFVT SRGNDFALVA VHDISAQYRH KAELERLAWN
CNLTGLHNRL HFTQNLDKSA NGVLILVDLL GFNRFNDTHG HERGDALLIE VARRVKHFAN
YHNAIDVARI GSDEFGILLP EIGELAELER CVAKLYEKLL APVIIARDKV EPKPAIAVVN
IESVVDLFAP LTCADIALQY AKRKALKHYQ IFNTQLLEAF KANIEIERDL QQALKSREFE
LYYQPLMDLQ TQRYIGAEAL IRWHHPKKGI LYPGAFIEIA EQTGLINAMG QWVLETACKQ
LNLWQHKNID LTMHVNVSAR QFFSSQLYAQ VWTLVTRYRI KPKRLILEIT ETELMSDIEH
ATKLCKELAE LGVGLAIDDF GTGHSSMRYL KQFPISKLKI DRSFVMDISS SRESREIVSA
IIAMASALNI SLTAEGVETK EQEAFLTQSA CHHAQGFLYS PAVRESDFSH LLTLQQSLIN
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