Gene Sden_2077 details

Gene Information

• Locus tag: Sden_2077
• ID: 4018569
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 2464152
• End bp: 2465978
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 637956101
• Product: phosphogluconate dehydratase
• Protein accession: YP_563082
• Protein GI: 91793431
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR01196] 6-phosphogluconate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTCAG TCGTAAAAGC TGTCACAGAC AGAATTATTG CCCGTAGCCA GAAACCTAGA 
GCCGCCTACC TTGCCGCTCT ACAGGATGCT CGCCTTAAAG GTGTGCACCG CAGTTCCTTA 
AGCTGTGGCA ATTTGGCTCA CGGTTTTGCC GCTTGCTCTC CTGCGGATAA GGACTCATTA 
CGTCAGTTGA CTAAGGCTAA CATAGGCATA GTCACGGCCT TTAATGACAT GCTCTCGGCC 
CATCAGCCTT ATGAGCATTA TCCAGAAATA TTGAAAAAAG CCTGTCAGGA TGTCGGCAGT 
GTGGCGCAAG TTGCCGCCGG TGTCCCTGCC ATGTGTGATG GCGTGACTCA AGGTCAGCCA 
GGCATGGAGC TAAGCTTACT AAGCCGTGAA GTTATCGCCA TGTCATCGGC TGTGGGCTTG 
TCTCACAACA TGTTCGATGG CGCGTTACTG CTGGGTATTT GTGACAAAAT CGTCCCAGGT 
TTACTGATTG GTGCCCTAAG CTTTGGTCAC TTACCTATGC TGTTTGTGCC AGCAGGCCCA 
ATGAAATCAG GCATTCCTAA CAAGGAGAAG GCCCGCGTTC GTCAGCAATT TGCCCAAGGG 
AAAGTCGATA GAGCAGCGCT GTTAGAGGCC GAATCTGCCT CTTACCACAG TGCGGGCACT 
TGTACTTTCT ACGGTACGGC AAACTCAAAC CAGTTAATGC TTGAAGTCAT GGGGCTGCAG 
TTGCCAGGTT CATCCTTTGT TAATCCTGAC GATCCCCTGC GTGATGCACT CAATAAAATG 
GCCGCTAAGC AAGTGTGCCG CCTCACAGAA ATGGGCACTC AATACACGCC TATTGGTGAA 
GTGGTGAGTG AAAAGTCTGT GGTGAATGGC ATAGTTGCAT TACTAGCGAC GGGCGGCTCG 
ACCAACTTAA CCATGCACAT AGTGGCTGCG GCTCGCGCTG CTGGCATTAT TGTCAACTGG 
GATGATTTCT CGGAATTATC AGATGCTGTG CCACTCATCG CCCGTGTTTA CCCCAATGGT 
CATGCAGATA TTAACCATTT CCATGCTGCT GGCGGCATGG CTTTACTCAT TAATGAGTTA 
TTGGATGCGG GATTACTGCA TGAAGATGTC AGCACAGTGG CAGGTTTTGG CCTTCGTCGT 
TACACCCAAG AGCCAAGACT GATAGACGGT GAGCTGCGTT GGGTCGATGG CCCCACTGAA 
AGCCTAGATA AAGAAGTCTT GACCCATGTT GCGACGCCAT TTCAAAGTAA TGGTGGCCTT 
AAGTTAATGA AAGGCAACTT GGGCCGCGCC GTGATTAAAG TCTCTGCAGT GAACGAAGCA 
AATCGTGTGG TGGAAGCACC TGCGGTAGTG ATAAACGATC AAAATGAAAT CGATGCGCTA 
TTTCAATCCG GTTCACTGGA CCGAGATTGT ATCGTAGTGG TCAAAGGTCA AGGCCCTAAA 
GCCAATGGCA TGCCTGAGCT GCACAAGCTC ACGCCGTTTT TAGGCACCTT GCAAGACAAG 
GGCTTTAAAG TGGCCTTAGT GACTGATGGT CGTATGTCTG GCGCCTCGGG CAAAGTGCCT 
GCGGCTATCC ACTTAACGCC AGAAGCCTTA GACGGCGGCC TCATTGCTAA AGTGCAAAAT 
GGCGATCTTA TTCGGGTTAA TGCGCTCACT GGTGAGCTGA GCCTCTTGGT AGATGAAGCC 
GTGTTGGCTG CCCGCACTGC CGAGAAAGTC GATTTACACC ACTCCAGTTA TGGCATGGGC 
CGTGAGTTAT TTAGTGCACT GCGTCGCAGC CTAAGTAGCC CTGAAACCGG TGCAAGAAGC 
ACCAGCGCCA TAGATGAACT CTATTAA 

 

Protein sequence

MNSVVKAVTD RIIARSQKPR AAYLAALQDA RLKGVHRSSL SCGNLAHGFA ACSPADKDSL 
RQLTKANIGI VTAFNDMLSA HQPYEHYPEI LKKACQDVGS VAQVAAGVPA MCDGVTQGQP 
GMELSLLSRE VIAMSSAVGL SHNMFDGALL LGICDKIVPG LLIGALSFGH LPMLFVPAGP 
MKSGIPNKEK ARVRQQFAQG KVDRAALLEA ESASYHSAGT CTFYGTANSN QLMLEVMGLQ 
LPGSSFVNPD DPLRDALNKM AAKQVCRLTE MGTQYTPIGE VVSEKSVVNG IVALLATGGS 
TNLTMHIVAA ARAAGIIVNW DDFSELSDAV PLIARVYPNG HADINHFHAA GGMALLINEL 
LDAGLLHEDV STVAGFGLRR YTQEPRLIDG ELRWVDGPTE SLDKEVLTHV ATPFQSNGGL 
KLMKGNLGRA VIKVSAVNEA NRVVEAPAVV INDQNEIDAL FQSGSLDRDC IVVVKGQGPK 
ANGMPELHKL TPFLGTLQDK GFKVALVTDG RMSGASGKVP AAIHLTPEAL DGGLIAKVQN 
GDLIRVNALT GELSLLVDEA VLAARTAEKV DLHHSSYGMG RELFSALRRS LSSPETGARS 
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