| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2046 |
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| Symbol | yebU |
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| ID | 4018538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2429660 |
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| End bp | 2431177 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637956070 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_563051 |
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| Protein GI | 91793400 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.362171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCAAA TAAATCCAAA CTTTATCAAA CACATTGAGC AAGAGCTACC CTCTCATCTG
TCCATGGATG AGTTTATCTT GGCGTGCAAC CGTCCTTTAC GTCAATCCAT TAGGGTCAAC
ACCTTAAGGA TTTCAAGTGA GGATTTTATC GCCCTAATGA CGCCTCGCGG TTGGTCTTTT
TCGCCAGTGC CTTGGTGCAG CGACGGCTTT TGGATAACCC TGACTCATGA TGAACAGCTG
GGTAATTGCC TAGAGCACAT TCAGGGCTTG TTCTACATTC AAGAAGCCAG CTCCATGTTA
CCGCCAACCG CATTATTTAC GAATGATGAT GCTGATGAAC GAGCACCACT GCGGGTATTA
GATATGGCCT CGGCCCCAGG CTCTAAGACC ACCCAAATGG CAGCATTAAT GAATAACAAC
GGCCTCTTGA TAGCCAATGA GTATTCCGCC AGTCGAGTGA AAGTCTTGCA CGCCAATGTG
CTGCGCATGG GCGTGAGTAA CTGCGCCCTG ACGCATTTTG ATGGCCGCGT GTTTGGCGAA
TATCAATACG AAGCCTTCGA TGCCGTGCTA CTTGACGCCC CTTGTGGCGG CGAAGGCACA
GTGCGTAAAG ATCAAAACGC GTTAAAAGAG TGGCAACTGG ATGATGTGAT AGCCATTGCC
GACACGCAAA AAGACTTAAT CGAAGCCGCC TTTTTAGCGT TAAAACCCGG CGGTGCACTG
GTCTACTCCA CCTGCACCTT AAGCCAACTT GAAAATCAGG CCATTTGTCA GCACCTATTG
AGCCGTTATC CCGAGGCGGT AGCGTTTGAA TCCCTAGCGA CGTTATTTGA TGGCGCAGCT
AAGGCCTGCA CTGAAGAAGG CTTTTTGCAT GTGTGGCCGC AAATTTATGA CAGCGAAGGT
TTTTTTGTTG CCAAAATGCG CAAAACCGCC TCAGTACCCA GGATCAAAAG TCAGCCTAAA
GCCCAGAAAA ATTTCCCCTT TAGCCCAGCC CCTGAGAAAC AAATTGCCGC GCTGCAAGAC
TATATCCAGC AAAGCTTCGC CTTAAGCTTG CCGCCAGGGG CACAGGTGTA TTTAAGGGAC
GATGAGTTTT GGTTATTCCC CGCGCCCTTT AGTGATTTTA TTGGCACAAT GCGGTTTCAG
CGCATTGGCA TCAAGCTGGC TGACGTGCTT AAAAAAGGAT TTAAAATCAA GCATGAAGCC
GTTATCGCCT TAGGGGCGAA ACTCGGCACT AACGCAAACA ATAACTCAAA CACTAATCCA
AACAATAACG CAAACACTAA TCCAAACAAT AACTCAAACA CTAACCCAAG ATGCATCCCA
TTAAATCAAG CTCAGGCTGA GCAATTTTTA ATGGGCCGCG ACATAGACAC GGCAAGCTTT
GATGGCAAAC TTGACCTCAC TCCCAAGGGG GAAATGATGG TCAGCTACCA CGGCGCCGCC
ATAGGGGTGG TTAAACACTT AGGCCACAGG CTTAAAAACA GCCTACCACG GGAACTGGTG
AGAGATAACT TAGGTTGA
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| Protein sequence | MLQINPNFIK HIEQELPSHL SMDEFILACN RPLRQSIRVN TLRISSEDFI ALMTPRGWSF
SPVPWCSDGF WITLTHDEQL GNCLEHIQGL FYIQEASSML PPTALFTNDD ADERAPLRVL
DMASAPGSKT TQMAALMNNN GLLIANEYSA SRVKVLHANV LRMGVSNCAL THFDGRVFGE
YQYEAFDAVL LDAPCGGEGT VRKDQNALKE WQLDDVIAIA DTQKDLIEAA FLALKPGGAL
VYSTCTLSQL ENQAICQHLL SRYPEAVAFE SLATLFDGAA KACTEEGFLH VWPQIYDSEG
FFVAKMRKTA SVPRIKSQPK AQKNFPFSPA PEKQIAALQD YIQQSFALSL PPGAQVYLRD
DEFWLFPAPF SDFIGTMRFQ RIGIKLADVL KKGFKIKHEA VIALGAKLGT NANNNSNTNP
NNNANTNPNN NSNTNPRCIP LNQAQAEQFL MGRDIDTASF DGKLDLTPKG EMMVSYHGAA
IGVVKHLGHR LKNSLPRELV RDNLG
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